Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08647 ATGAAGTGTTTGCGCGAGAAAGACTATGGTCTATTTTCTGCTCATCCAACATCCCACAATGTTCTTGGATGCCAATCATGGGGGACTTCTTCTGAATCTGAAGTCCAACAATCATCTATGTCAAATAGCTTGAGCTTGAAAGTTGATGTTCTGCCACAACAATGCCACAAGAGCAAGGCACTGAGTTTCCAAATCCAAGAACAGGATTCATCTTCTACTCAATCGAGCGGTCAATCTTATCCTGAAGTTGGTTCAGCACAATCAGGTCAAATTCCTTTCCAGCATAGTTCTTCTACTGGCTCAACATTTAGTAGAAATGAGAAGAGTATGGGATGTCTCATCAGGTCACCTATGGGGAGTCAGGATTTCTCCTTCCCTCCAATACTGGATTACAACCAATCACTTGCTCATATGGCTTTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCTGCATATGGCCCACAGTCTAAGATTCATCATGCCCAGTTAATGGGAACTGCTCATGTTCGAATTCCTCTACCATCTGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCTAAACTTGAAGCACATAACAAACTCATCAAGGATAGGAAACCATACCTTCATGAGTCCCGCCATAAACATGCATTGAAGAGAGCTAGGGGTGCTGGTGGCCGCTTTCTCAATACCAAAAAGCTCCAAGAATCAAAGCTCACTTCACCAAACCATGGCCTAAATGTTTCTTCCACCTCTACTGGTTTGAATTTGGGTGGAAATATGCCAGAATCTAAAATGCATCACAGAGAAAACTACACCGACGGTGCTTCAACCACCACCTGTTCTGATGTCACATATGCATCTAATAGGAATGAAATCTTCCAGCAACAGGATTCAGATTTCAGGTTTTGTGGTTACTCTTCTCACGCTGGGAGAAACATGCAGGATTATACAGCTGATAAGGGTGGTGGTGTGAATCAACATCGCCGTTTATCTGTCCTCATGTGA 1038 0.4326 MKCLREKDYGLFSAHPTSHNVLGCQSWGTSSESEVQQSSMSNSLSLKVDVLPQQCHKSKALSFQIQEQDSSSTQSSGQSYPEVGSAQSGQIPFQHSSSTGSTFSRNEKSMGCLIRSPMGSQDFSFPPILDYNQSLAHMAFHYADPCYSGLLAAAYGPQSKIHHAQLMGTAHVRIPLPSDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHKHALKRARGAGGRFLNTKKLQESKLTSPNHGLNVSSTSTGLNLGGNMPESKMHHRENYTDGASTTTCSDVTYASNRNEIFQQQDSDFRFCGYSSHAGRNMQDYTADKGGGVNQHRRLSVLM. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08647 345 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 183 238 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 MobiDBLite consensus disorder prediction 66 104 - -
Seca3g08647 345 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 307 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
Seca3g08647 345 Gene3D - 181 242 - -
Seca3g08647 345 MobiDBLite consensus disorder prediction 245 266 - -
Seca3g08647 345 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08647 Seca-Chr3 220844893 220849743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08647 14 338 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.216 1.29e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca3g08647 CBFB_NFYA 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08647 K08064 - gmx:100500765 415.231