Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08645 ATGAACTTGGGTGCGGCCGAGGAAGAATCGGCTGCAGCAGAGGTTCATGTACCAGCTGAAATTGATTGGCAAAAGCTTGATAAATCAAAGTTTTTCTTTCTTGGTGCAGCCCTTTTCTCTGGAGTTTCAGCAACTCTCTACCCAGTTGTTGTGTTGAAAACTCGTCAGCAAGTAGCTCTATCTCAAGTTTCTTGCATCAAGACTGCATTTTCAATGATCAGGCTTGAGGGTTATCAAGCATTATACAGAGGATTTGGGACTTCTTTGATGGGTACAATCCCTGCTAGAGCCTTATATATGGCTGCCCTTGAAATTACCAAAAGTAATGTAGGTACTGCTACTCTTAGGTTTGGGTTACCTGAACCAACTGCTGCTACAATTGCCAATGCAATTGGAGGGTTAAGTGCAGCCATGGCAGCTCAAATTGTGTGGACCCCAGTTGATGTTGTAAGCCAGAGGTTAATGGTTCAAGGTGGTTCTAGTTCTAGTTCACAAATTCAATATATCAATGGGATTGATGCCTTCAGAAAAATTCTCAACACAGATGGTCCAAGAGGGTTGTATAGGGGTTTTGGGATATCAATTTTGACTTATGCACCTTCAAATGCAGTTTGGTGGGCTTCCTATTCAGTGGCACAAAGGTTGGTTTGGGGTGGGGTTGGATACTACTTGGGTAAGAAAAATGATGATGATGAGAGGAGTATTGAATTGAGGCCAGATTCAAAAACAGTGATGGCAGTTCAAGGAGTGAGTGCAGCTATGGCAGGTGGCATGTCTGCTTTAATTACCATGCCATTGGATACAATCAAGACTAGATTGCAGGTCTTGGATGGTGATGAGAATGGTCGTCGTGGACCAACAGTTATGCATACAGTGAGAAATTTGGTTAAAGAAGGTGGTTGGATGGCATGTTACAGAGGGTTGGGACCTAGGTGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACTACTTATGAGTTACTGAAACGACTTTCTACTAAAACTCAAGAGGTTTTGACTTGA 1026 0.4279 MNLGAAEEESAAAEVHVPAEIDWQKLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVALSQVSCIKTAFSMIRLEGYQALYRGFGTSLMGTIPARALYMAALEITKSNVGTATLRFGLPEPTAATIANAIGGLSAAMAAQIVWTPVDVVSQRLMVQGGSSSSSQIQYINGIDAFRKILNTDGPRGLYRGFGISILTYAPSNAVWWASYSVAQRLVWGGVGYYLGKKNDDDERSIELRPDSKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMHTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYELLKRLSTKTQEVLT. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08645 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 215 IPR018108 -
Seca3g08645 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 243 332 IPR018108 -
Seca3g08645 341 Gene3D Mitochondrial carrier domain 30 339 IPR023395 -
Seca3g08645 341 PRINTS Mitochondrial carrier protein signature 188 206 IPR002067 GO:0055085
Seca3g08645 341 PRINTS Mitochondrial carrier protein signature 252 274 IPR002067 GO:0055085
Seca3g08645 341 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Seca3g08645 341 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Seca3g08645 341 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Seca3g08645 341 Pfam Mitochondrial carrier protein 246 335 IPR018108 -
Seca3g08645 341 Pfam Mitochondrial carrier protein 126 216 IPR018108 -
Seca3g08645 341 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 338 - -
Seca3g08645 341 SUPERFAMILY Mitochondrial carrier 24 329 IPR023395 -
Seca3g08645 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 109 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08645 Seca-Chr3 220832420 220833445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08645 1 338 Chloroplast and Mitochondria Gene Families AT1G72820 73.547 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08645 K15121 - zju:107403560 523.087