Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08640 ATGGCTGAAGAAGGGTCCACCGTAATTGCCATTGATAAAGACAAGTACAGCAACTACGCCGTAAAGTGGGCTGTGGATCACCTTTTGAAGAAAAACACTTCCTGCACTCTCATCCATGTCAGAACCAAGGCCTTGAATTCCCATGAGTTTGAGGCTGTCTGTAAACAAGGTCGTCCACCAACTGAAGAAGAATTGCACCATCTTTTTCTTCCCTTCAGAGGGTTTTGTGCTCGGAAAGGGATTGTAGCAAAGGAGTTGGTCCTGCATGACATTGATGTTCCAAGTGCACTTATTGATTACATTATTAACAACTCTATCAGCAATATTGTTGTTGGTGCTAGTCGCTGGAATGCTCTTATAAGGAAATTTAAAGATGATGTGCCAACAAGCTTAGTGAGGTCTGTTCCAGTGTCATGCATGGTGCATATTATATCAAAAGGAAAAGTGCAAAATATTCGACCAGCAGGTCGTTCTCAAATCATGCCGACAAAATCTTTTAAAGATAGTTCTAGTCCCAAGGGATTCGAAGAAGTAAACAGCAAATCATTCAAATATGGAAATGACATAGAGAATGCTTCGCCAAGTTTATCTAATGAAAGTCACTCCTCACAAAATTCATCAAATCGAAGTTCCCTCACCCGTAACACTTCAAGCCCGCTTGGTTCTCAATTGACCGAGGCATCACATGACATGTCAAACACTCATAGGAGCAAATCTTTAAAACATTCCCCAAAAAGTGTGGAGATAGAAATAAGAAAATTAATAGTAGAACAAAAGAGAACAACACAGAGGTCTAGTAGCTGTAGGGAAGGTGCTGCAGCAAAACATAAGGAACTTGAAAGGATTAGGAAAGACGAACGGAACATGGAAAAAGCTAGGGTTGCTGAAGAGGCTACATTAGCATTGGCAGAAAGGCAGGAAACCAATGCCATTGAGGAAGAAATGAAGATTCGGAAGAAAAGGCATGCTGAAATAAGAGCCTTGCATGAAGAAGAAGAAGAGAGGAAGAGAGCATCAAATGCAAGTGCACATAACAACATTCAATTTATAAGATACAACATTAAAGAAATTGAAGTTGCAACAAATTACTTTGACAATGTTCTCAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGGGTGCTTGATCACACTGTTGTTGCTGTTAAGGCCTTGAGACCAGACATAACCCAAGGGGAGAAGCAATTTCAACAAGAGGTTCAAGTTTTGAGCACCATAAGACATCCAAACTTGGTTCTACTTATAGGTGCATGTCCAGAGTTTGGATGCCTTGTGTATGAGTACCTAGAAAATGGCAGCTTAGAAGACCGCCTTTTCCTAAAAGACAATACCCCACCAATTCCATGGAAGATTCGATTTAGAATAGCATCAGATATTGCCACTGGTCTTCTTTACCTTCACCAGACAAAACCTGAGCCAGTTGTGCATCGTGACCTCAAGCCAGCAAACATTCTCTTGGACAGGAACTATGTAAGCAAGATCACTGATGCAGGTTTAGCCAGGCTTGTTCCTCCTTCAGTAGCCAACAAAACCACTCAATACTACAAAACAGCAGCAGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGACTATTGGGTGTGAAATCAGACATATATTCATTAGGTGTAATGTTGCTACAGATTATTACTGGAAAGCCTCCTATAGGTGTGGCACGCTTGGTTGAGGAGGCTATACACAAAGGTAAATTTGCAGAGGTGCTTGATCCAAATGTGACAGATTGGCCTATTGAAGATACTCTATCTTATGCTAGGTTGGCTTTGAAGTGTTGTGAGATGAGAAAAAGGGATAGGCCAGATCTTGGTTCTGTCATTTTGCCAGAGCTGAATCGACTCCGAGATCTGTGA 1902 0.4122 MAEEGSTVIAIDKDKYSNYAVKWAVDHLLKKNTSCTLIHVRTKALNSHEFEAVCKQGRPPTEEELHHLFLPFRGFCARKGIVAKELVLHDIDVPSALIDYIINNSISNIVVGASRWNALIRKFKDDVPTSLVRSVPVSCMVHIISKGKVQNIRPAGRSQIMPTKSFKDSSSPKGFEEVNSKSFKYGNDIENASPSLSNESHSSQNSSNRSSLTRNTSSPLGSQLTEASHDMSNTHRSKSLKHSPKSVEIEIRKLIVEQKRTTQRSSSCREGAAAKHKELERIRKDERNMEKARVAEEATLALAERQETNAIEEEMKIRKKRHAEIRALHEEEEERKRASNASAHNNIQFIRYNIKEIEVATNYFDNVLKIGEGGYGPVFKGVLDHTVVAVKALRPDITQGEKQFQQEVQVLSTIRHPNLVLLIGACPEFGCLVYEYLENGSLEDRLFLKDNTPPIPWKIRFRIASDIATGLLYLHQTKPEPVVHRDLKPANILLDRNYVSKITDAGLARLVPPSVANKTTQYYKTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVARLVEEAIHKGKFAEVLDPNVTDWPIEDTLSYARLALKCCEMRKRDRPDLGSVILPELNRLRDL. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08640 633 Pfam Protein kinase domain 367 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08640 633 PANTHER OS02G0152300 PROTEIN 8 632 - -
Seca3g08640 633 Gene3D Phosphorylase Kinase; domain 1 341 436 - -
Seca3g08640 633 Gene3D HUPs 6 142 IPR014729 -
Seca3g08640 633 CDD STK_N 6 147 - -
Seca3g08640 633 MobiDBLite consensus disorder prediction 156 177 - -
Seca3g08640 633 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 141 - -
Seca3g08640 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Seca3g08640 633 MobiDBLite consensus disorder prediction 231 246 - -
Seca3g08640 633 SMART serkin_6 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08640 633 FunFam Os07g0541700 protein 437 528 - -
Seca3g08640 633 CDD STKc_IRAK 370 630 - -
Seca3g08640 633 Gene3D Transferase(Phosphotransferase) domain 1 437 632 - -
Seca3g08640 633 SUPERFAMILY Protein kinase-like (PK-like) 345 622 IPR011009 -
Seca3g08640 633 ProSiteProfiles Protein kinase domain profile. 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08640 633 MobiDBLite consensus disorder prediction 184 230 - -
Seca3g08640 633 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 336 436 - -
Seca3g08640 633 Pfam Universal stress protein family 8 141 IPR006016 -
Seca3g08640 633 MobiDBLite consensus disorder prediction 154 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08640 Seca-Chr3 220744487 220749781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08640 7 633 Receptor kinase-like Gene Family AT1G17540 47.953 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g08640 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08640 - - gmx:100814365 801.586