Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08618 ATGGAACCACGGATTGGGAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAACTCGTGAGTACTATGACTTACTCTAATTTAGAATTTGTTGATCTTTACTTTTCCTGTTTGCAAATCCAAAACACAATTTGCATGAATAGCCAGAGGTGCCAAAAGGAGTGCCTGAGACTGTCCCTTACTCCCTTGTGCCTTGGTTCCACAACTCCAAAGCGGGTGTTTGGCCATGTATCCACTGCGGCTTATCCTTTTTCATTAATGGCATTGGTGATAGTTGACTTATTGAAGAACTGTGTTGTCTCTGGGATTCCAAATGTGAGATGGTTTGGTGTTGAAGGAGAATACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAACTTCTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAACCGAGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCGGATAACTTCCTCATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTCGGTCTTGCTAAGAAATACAGAGACACCTCTACCCATCAGCATATTCCTTATAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATAGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCGTGGCAGGGATTGAAAGCGGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTGTGTCGTGGCTACCCCTCAGAATTTGCTTCATACTTCCATTACTGTCGGTCACTGCGGTTTGATGATAGACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCACGGGCCATTGGTCCTGCTGCTGGACCAAGTTCTGGCATGCCGCCAGCTATTGTCAATGCTGATAGGCAGACAGGTGGGGAGGATGGTAGGCATACTGGTTGGTCTTCATCAGATCCTACTCGTAGAAGAAACTCTGGACCTATTGCTAATGATGGAATCTTATCTAGACAAAAAGCCCCAGTTCCAAGTGACTCAGCTGGATCTAAAGATGTTATGTTGTCTAGTTCTACTATCTTCCGGCCAAGTGGGTCTACAAGGCGAGGTGCTGTTTCCAATAGTCGTGATGCAGTTGTTGGCAGTGAGACTGAGCCTTCTCACCCTCTTGTCACTGATGCTAGTCCAGGAGCACTCCGTAAAATCTCTGGTGCTCAAAGAAGTTCAGCTATCACATCAACCGAGCACATTAGAACATCGTCTAGCAGAAACACATCAAACATGAAGAATTATGAGTCAACTCTCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAGGGTACAGTATTAG 1596 0.4298 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLVSTMTYSNLEFVDLYFSCLQIQNTICMNSQRCQKECLRLSLTPLCLGSTTPKRVFGHVSTAAYPFSLMALVIVDLLKNCVVSGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDRPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARAIGPAAGPSSGMPPAIVNADRQTGGEDGRHTGWSSSDPTRRRNSGPIANDGILSRQKAPVPSDSAGSKDVMLSSSTIFRPSGSTRRGAVSNSRDAVVGSETEPSHPLVTDASPGALRKISGAQRSSAITSTEHIRTSSSRNTSNMKNYESTLRGIESLNFNDERVQY. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08618 531 MobiDBLite consensus disorder prediction 431 462 - -
Seca3g08618 531 Gene3D Transferase(Phosphotransferase) domain 1 105 366 - -
Seca3g08618 531 CDD STKc_CK1_delta_epsilon 8 340 - -
Seca3g08618 531 MobiDBLite consensus disorder prediction 487 509 - -
Seca3g08618 531 FunFam CK1 family protein kinase 103 367 - -
Seca3g08618 531 Gene3D Phosphorylase Kinase; domain 1 1 57 - -
Seca3g08618 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Seca3g08618 531 MobiDBLite consensus disorder prediction 364 471 - -
Seca3g08618 531 MobiDBLite consensus disorder prediction 392 407 - -
Seca3g08618 531 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca3g08618 531 SUPERFAMILY Protein kinase-like (PK-like) 5 348 IPR011009 -
Seca3g08618 531 SMART serkin_6 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08618 531 ProSiteProfiles Protein kinase domain profile. 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08618 531 Pfam Protein kinase domain 132 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08618 531 PANTHER CASEIN KINASE-RELATED 13 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08618 Seca-Chr3 220336060 220341230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08618 158 340 MAP Kinase Kinase Kinase AT1G62400 27.568 6.80e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca3g08618 Pkinase 6.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08618 K02218 - gmx:100795570 733.406