Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08617 ATGCCACGGGGTAGGATCAGGGCAAAGCTCCGCAGGAGCCATCTTTACACTTTTGGTTGCCTTAGGCCAACTACTTCTGAGGAGGTTCCTCATCCACTTCAAGGTCCTGGCTACTCGAGAACTGTATATTGCAACCAGGCTCTACTCCATGAAAAGAAATCTCTATTTTACTGCAAGAATGATATATCAACGACCAAGTACAATGTTATCTCGTTTTTGCCTAAGGCACTGTTTGAACAATTTCGGAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGTCTCTCGGCCTCTCCAATTTCACCTTTCAGCCCAGTGAGCATGATTGCTCCTTTGGTGTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAGGATTCACGCAGGTTCCTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTGGTCTCCATAAAGGCAATGGTGTTTTTGGTCCCAGGTCCTGGCAGAAAATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCATCTGACTTGCTTCTCTTAGCATCAAGTTATGAAGATGGGATATGCTATGTGGAGACCATGAATTTAGATGGTGAAACCAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTTGATAATGATGGAGCTTTTAAGGATTTCTCAGGAACAATACGTTGTGAAGACCCAAATCCCAATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACGTCAGGTTTATCCTCTTGATCCTAGTCAAATTCTTCTTCGAGATTCAAAGCTTAGGAACACTGATTATGTCTATGGGGTGGTCATTTTCACTGGTCACGATAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGCTAAGACCAAGTACCAAACCACAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTATGATCCTGGGAAAATTGGGTTGGCTGGGATGAGCCATCTGATCACTGCACTTATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCAATTGAGGTTGTGAAGGTATTGCAAGCAACCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGAAGCACGTACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTACCTATGGTGTACGTTCCAGTGAAGTTGAACTTGCTGCAGCAGAGCAGATGGCTTCTGATCTTGAGGAGCGGGACTTGGATCTCTCTAATTTCCCCATGCCTAAGAGTAAAGTGCGAGGGGAAAATGTTAGAAAAGACGAAGAAATTGAACTTGAGACTGTTGTTGCTTCCAAGGGTGATGAGCATCGAAGGCCTGCCATAAAGGGATTTGGTTTTGAAGACAACCGGCTCATGAATTGTAACTGGTTGAAAGATCCCAAGGCTGATGTTCATTTGATGTTTTTCCGGATATTAGCAGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACTGACAGTTGTACATATGAAGCTGAGTCACCTGATGAAGGAGCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACTCAATCAAGTGTTGTCGTACGGGAAAAATTTTCTGCTTCTGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATCTTCTGGATTTTACAAGCAAAAGAAAGCGTATGTCAGTGATTGTGCGTGATGAAGAGGGAAACATTATTCTTTTGTGCAAAGGAGCTGACAGTATCATATTTGATCGATTATCCAAGAATGGAAAAATGTATTTGGAGGCCACTACTAGACATTTGAATGAATATGGAGAAGTTGGTTTGAGAACACTAGCCCTGGCTTACAGAAAGCTTAATGACCAAGAGTATTCTGATTGGAATAACGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGATAGAGAGGCAATGCTTGAGAAGGTATCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTAGGCTATCATTATTTATTGTCAATATATATATATATATATAGGAAAATGCTAATGAGTGCCCTAAGGGCACTTGTTAAGGAACTAAAAATAGAAGGTTTTTGTTGGAGTATGTGA 2319 0.4066 MPRGRIRAKLRRSHLYTFGCLRPTTSEEVPHPLQGPGYSRTVYCNQALLHEKKSLFYCKNDISTTKYNVISFLPKALFEQFRRVANIYFLLAACLSASPISPFSPVSMIAPLVFVVGLSMAKEALEDSRRFLQDVKVNRRKAGLHKGNGVFGPRSWQKIMVGDVVKVEKDQFFPSDLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQTTKWWYLRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTTYGVRSSEVELAAAEQMASDLEERDLDLSNFPMPKSKVRGENVRKDEEIELETVVASKGDEHRRPAIKGFGFEDNRLMNCNWLKDPKADVHLMFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVVREKFSASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEVGLRTLALAYRKLNDQEYSDWNNEFQKAKTAVGPDREAMLEKVSDIMERELILVGATAVEDKLQKGVGYHYLLSIYIYIYRKMLMSALRALVKELKIEGFCWSM. 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08617 772 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Seca3g08617 772 Gene3D - 482 729 IPR023299 GO:0000166
Seca3g08617 772 FunFam Phospholipid-transporting ATPase 589 720 - -
Seca3g08617 772 Gene3D - 115 288 - -
Seca3g08617 772 Gene3D - 432 453 IPR023299 GO:0000166
Seca3g08617 772 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Seca3g08617 772 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 684 IPR023299 GO:0000166
Seca3g08617 772 SUPERFAMILY HAD-like 410 434 IPR036412 -
Seca3g08617 772 Gene3D - 419 431 IPR023214 -
Seca3g08617 772 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 735 - -
Seca3g08617 772 NCBIfam phospholipid-translocating P-type ATPase 57 735 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca3g08617 772 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Seca3g08617 772 Pfam Cation transport ATPase (P-type) 544 649 - -
Seca3g08617 772 Coils Coil 448 468 - -
Seca3g08617 772 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 416 IPR023298 -
Seca3g08617 772 FunFam Phospholipid-transporting ATPase 118 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08617 Seca-Chr3 220322117 220328981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08617 1 735 Primary Pumps ATPases AT1G17500 71.332 0.0 1086
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08617 K01530 - gmx:100792942 1313.13