Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08610 ATGGGTGCTTCCGGAAGATGGTTTAAATCACTTCTTCCTCTTAGAAAGACCTCAACCTCAACAACTGACCAGGGTGTTGATAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGACCTCCTCAGAAGGGTCCTCCACCTCTATGAAGAAGGGTGGTGCTGCTGTATCCGATTCTTCTTCGCTTACTGCTGCTGTGGCTGTGGTGGTTCGAGCTCAACCCAAAGATTTCAAGGTCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCTGTGTTTCGAGCATTTTTGGCTAGACGAGCTTTGAGGGCCCTGAGAGCAGTGGTAAGGCTGCAAGCTATATTTCGAGGCCGGCTTGTAAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAGGCACGTGTGAGGGCAAGGAATGTGAGGAACTCTCCAGAAGGGAAAGCAGTTCAGAAATTATTAGAAGAGTATCGTAACCAAGCTGATCCTGTTAAGCTAGCTGAGCAAGGATGGTGTGAGATTCCTGGAACTGCAGATGAAGTTAAAGCAAAGCTAAGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACACTGGTAATGAAATTGAATGCGTGTTTGCAGCAATCATCAAGAGTGAGTGCTAGTCCAAACTCAAAAGCTACCAAGGCAGTGACTCTTCTCAAGCATCACAACATAGACAATAAGAGCTTAGGAAGTAGCTTGTTAGAACGCTGGATGACAACCAAGCCATGGGAGAGTCCAATGTCAAGGAAGAGTGAAGAGCTTGTTCATTCCATTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCAGTTAAACCTCTTACAACTTGTCAACCAGCGTCATCATCTTCGACCATAAGCTCTGAATACAATTATGATGACAGCCTTGTATCAACTTCATTTACCTCTGGATCTCCATCTCTGCCATCCACCAATACTGTTATGGTGGAAGCAACAGAGGAAAAAGATGTTCATCAACCTAGCTACATGAATTTGACAGAATCATCTAAGGCTAAACTGAAATCTTGCAGATGTTCTTCACAGAATTCAAAGAGGCTTGTAGGGGAGGATTGTCTGTCTCATAGCACAATTCTGAATGGAGATACTAGAAGCAGTTCTGGTTCTGATCCTTCAGTGAATGTATGGAAGGATCTTTGTGCAACACCTCTAAGGGCAAGTTATCAAAAACGATATGCTGGGAGATAA 1266 0.4463 MGASGRWFKSLLPLRKTSTSTTDQGVDNKSKKKWKLWRTSSEGSSTSMKKGGAAVSDSSSLTAAVAVVVRAQPKDFKVIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLEEYRNQADPVKLAEQGWCEIPGTADEVKAKLRMRQEGAIKRDRAMAYSLSTLVMKLNACLQQSSRVSASPNSKATKAVTLLKHHNIDNKSLGSSLLERWMTTKPWESPMSRKSEELVHSIQSRRNGVTTRISVKPLTTCQPASSSSTISSEYNYDDSLVSTSFTSGSPSLPSTNTVMVEATEEKDVHQPSYMNLTESSKAKLKSCRCSSQNSKRLVGEDCLSHSTILNGDTRSSSGSDPSVNVWKDLCATPLRASYQKRYAGR. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08610 421 MobiDBLite consensus disorder prediction 39 54 - -
Seca3g08610 421 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
Seca3g08610 421 Pfam IQ calmodulin-binding motif 83 102 IPR000048 GO:0005515
Seca3g08610 421 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
Seca3g08610 421 MobiDBLite consensus disorder prediction 17 54 - -
Seca3g08610 421 PANTHER IQ-DOMAIN 5-RELATED 1 396 - -
Seca3g08610 421 Gene3D - 79 131 - -
Seca3g08610 421 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Seca3g08610 421 SMART iq_5 80 102 IPR000048 GO:0005515
Seca3g08610 421 SMART iq_5 103 124 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08610 Seca-Chr3 220184382 220187502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08610 1 405 IQD Protein Family AT2G26180 44.941 1.52e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08610 - - gmx:100788715 555.058