Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08606 ATGGATTATTATCCTCCCCAACACTCGCAATTGGAATCTGAGCCCGCCGCCTATAATGTTGAACAAAAAGAGGAATTTGATCCAAGAGGGCATGGTTTTGATGCTAATGATGACAACGTAAAGCCCTCCTTCAATCGTCGTGATTCCGCTTCAGGAAAACTCTTTGTTGGAGGCATATCTTGGGAGACTTCTGAAGAGTCATTTTTTAAGTACTTCAAAAAATATGGAGAAGTAATAGATTCAGTGATAATGATGAATAAACATTCTGGAAGGCCACGTGGGTTTGGCTTTGTAACATTTGCTGATTCAGCTGTCGCAGATGATGTTTTGGCAAATGAACATACCATAGATGGCAGAGTGCCCTGGATGACAAAGTCAATTTTGTTTTATCAGGTTGAAGTCAAGAGGACAGTCCCTAGGGAGGACATGGACATCATTGGAGTATTGAAAACAAAGAAGATTTTTGTTGGTGGTATACCCCAGTTTTTCACTGATGATGAGTTGAAGGAGTACTTTTCACCTTATGGTAATATTGCTGAGTACCAAATTATGCTAGATCATAAGACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAGTGAAGATTCAGTTGAAAAGGTTTTTTCAGCGGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAGATTAAAAGAGCTGAACCTAAAAGATCGGGAGGTGATTACAGTAGCACCTCAAGAAAATCTTATGGTGGTTTTGGCAATGGAATGGATGAATTTGGTGCGTATAGTTCTAGAAGTCGCAATCATGGAAAGAGGGGTGGACAGTATACAGATTCTGGTATGAATGGGCCATATAGCCATTTTGAGGGGAGCTACAGTGGAAGCTCTGCCACTGCTTATGGTGGCTATGGTGGTGGCTATGGTTATGGATTTGGATACGGCGGGCCAATGTATTGCTTTGGTGGTTATGGATTAAATTCTTATGGTAATGTTGGTGGTTATGGTGGCATTATGGGCTATGGAGATGGTAGTGGATATGGAAGAGCTGCTGGAAGTTTCAATCGGACTGGTGGCTATGACAGTGGCAAATTAGCTGAGAAGGATGATGGTCCTACCACTGGAAGATACCATCCTTACTGGAAGTGA 1134 0.4206 MDYYPPQHSQLESEPAAYNVEQKEEFDPRGHGFDANDDNVKPSFNRRDSASGKLFVGGISWETSEESFFKYFKKYGEVIDSVIMMNKHSGRPRGFGFVTFADSAVADDVLANEHTIDGRVPWMTKSILFYQVEVKRTVPREDMDIIGVLKTKKIFVGGIPQFFTDDELKEYFSPYGNIAEYQIMLDHKTGRSRGFGFVTFDSEDSVEKVFSAGKIHELGGKQVEIKRAEPKRSGGDYSSTSRKSYGGFGNGMDEFGAYSSRSRNHGKRGGQYTDSGMNGPYSHFEGSYSGSSATAYGGYGGGYGYGFGYGGPMYCFGGYGLNSYGNVGGYGGIMGYGDGSGYGRAAGSFNRTGGYDSGKLAEKDDGPTTGRYHPYWK. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08606 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Seca3g08606 377 Gene3D - 149 276 IPR012677 -
Seca3g08606 377 SMART rrm1_1 53 124 IPR000504 GO:0003723
Seca3g08606 377 SMART rrm1_1 153 226 IPR000504 GO:0003723
Seca3g08606 377 SUPERFAMILY RNA-binding domain, RBD 149 238 IPR035979 GO:0003676
Seca3g08606 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 119 IPR000504 GO:0003723
Seca3g08606 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
Seca3g08606 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 119 IPR000504 GO:0003723
Seca3g08606 377 MobiDBLite consensus disorder prediction 356 377 - -
Seca3g08606 377 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 142 279 - -
Seca3g08606 377 SUPERFAMILY RNA-binding domain, RBD 45 120 IPR035979 GO:0003676
Seca3g08606 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 35 376 - -
Seca3g08606 377 Gene3D - 51 144 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08606 Seca-Chr3 220026230 220029354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08606 54 228 Eukaryotic Initiation Factors Gene Family AT1G49760 23.729 1.86e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08606 K12741 - gmx:100818080 479.174