Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08602 ATGGAATCTTCATCTTCTTCCCATGTTCCTCGAATCAAATACGATGTCTTCATTAGTTTTAGAGGCACAGATGTACGCTCTGGTTTTTTTAGCCATTTGAAAAAGGAACTGAAGCAGAAGCAAGTTGATGCCTTTGTGGATGACAGACTTGAAGGAGGACATGAAATCTCACCAGCACTTGTCAAAGCCATTGAAGGATCACTTATTTCTTTGGTCATATTTTCCAAAGATTATGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGAGAGAAATAAGCAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCCGATGTACGGCACCAAAAAGGGACTTACGGAGATGCTTTAGCTAAACATGAAAAATATAGAGGAAACATAGCCAAGGTGCAAAATTGGAGATCTGCTTTGAATAAAACTGCTAATCTTTCTGGATTTCATTCATCAAAATTTGGGGATGAAGTTGAGCTTATAGAAGAAATTGTTAAATGCTTGTCCTCCAAGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATTTGAAGTCACTACTGTGCCTAGGGTCGACACTAGATGTTCTTGTCATTGGAATTTGGGGCATGGGTGGGATTGGTAAGACAACTATTGCAGCTGCAGTATATAACCATCTTTGTTTTGAATTTGAAGGGTGTTGCTTTATGGCAAACATAAGGGAAGAATCAGAGAAACATGGACTGATTAATCTAAAGAATAAGATTCTCTCTATATTACTAAATGAAAATAATCTATATATTGGCACACCTAATGGAGTGCCCCCTTATGTTAAAAGAAGGTTGGTTCGTAAAAAGGTTCTTCTTGTTCTTGATGATATCAGTGATTCAGAGCAGTTAGAAAATTTAGTTGGAGCACTTGATTGGTTTGGCTCTGGTAGTAGAATCATTGTAACAACTAGAGATAAGCAAGTGCTTGGTAAAAAAGTTGACACTATATATGAGGCTAAGGCATTAAACACTGAGGAAGCTATTCAACTTTTCATTATGAATGCCTTTGAACATAGGTTTCTTGACATGGATTGGGTTGAGCTATCAAGAAGGGTGATTAAGTATGCTAATGGAAACCCATTAGCTTTAAAAGTTTTGGGTTCTTTTCTTTATGGTAAAAGCAAAATAGAATGGGAAAGCCAATTGCAGAAACTTAAGAAAATGCCTCACTCAAAAGTTCAAAATGTGTTGAGATTGACCTATGATAGACTTGATCGAGAAGAGAAGAACATATTTCTGTATATTGCATGTTTTCTGAAAGGATATGAAGTTCACAGAGTAATAGTTCTGCTTGATGCTTGTGGTTTCTCAACAATTATTGGGTTAAGAGTGCTTAAAGATAAAGCCCTTATAATTGAAGCCAAGGGCTCAGGAAAATCAATTGTATCAATGCATGACTTGATACAAGAAATGGGTTGGGAGATTGTTCGAGAAGAATGTATTGAAGACCCTGGGAAACGCAGTAGGTTATGGGATCCTAATGATATTCATCAAGTATTAACAAATAACACGGGAACTAAAGCCATTCAAAGCATAACTCTGAACGTCTCAAAATTTGATGAGCTGAGCTTAAGTTCTCGAGTCTTTGCTAGCATGAAACAGTTAAAGTTTCTTAATTTTAACCAACACTATGGCGATGAGCAAATCCTGTATCTTCCTGAGGGCCTTGCATCTTTGCCAAATAACATGAAACTTTTTCATTGGGTTAGTTATCCTTTGAAATCCTTGCCTCAATCTTTTCGTGCAGAAAACCTTGTTGAGCTCAAAATGACTTGGAGCCGAGTGGAAAAACTTTGGGATGGGATCCAGAATCTTGAACATTTAAAGAAAATTGACCTCAGTAATTCCAAATATCTGCTAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTAGAACTCTATGCTTGCAGAAATTTGCGCAATGTTCATCCATCTATTCTCTCTCTCAAAAAGCTTGTGCGGTTAAACTTATTTTACTGCAAAGCGCTTACCAGTCTTAGAAGTGATACCCATTTAAGATCACTCCGTGACCTCTTCCTTGGTGGCTGCTTAAGACTCAAGGATTTTTCAGTGACTTCAGAGAATATGAAAGACTTAATCTTAACTTCAACGGCTATTAATGAATTGCCCTCATCAATTGGGAGGCTCAAAAAGCTTGAAACATTGACTCTTGATCACTGCAAAAGTCTAAACAATCTTCCAAACAAGGTTGCTCACCTAAGATCACTTCGTGCTCTTCATATTCATGGTTGCATACAACTTGATGCATCAAATCTGCATATCCTAGTTAATGGTTTAGGGTCTTTGGAAACATTAAAGCTGGAAGAATGTTGTAACTTATTTGAAATTCCCGATAACATTAGCCTCTTATCCTCATTGCGTGAGTTGTTACTGAAAGGAACAGATATTGAGAGATTTCCTTCAAGCATCAAGCATCTTTCTAAGCTGGAAAAGCTTGACATAAAGGGTTGCAAGAGGCTTCGTTATCTGCCAGAGCTTCCACCATCAATAAAAGAGCTATATGCTACTAATTGTTCATCCTTGGAGACAGTAATGTTCACTTCCAGAGCTGAAGAACTACTACAACTACAAGCATTTAAGATACACACACAATTCCAAAATTGTGTTAACTTGGATGAATATTCACTCGGTGGTATTGGAGTAAATGCTCATGTGAACATGAAGAAATTGGCATATGATAATCTCTCAACAATAGGAAGCAAATTTATTGATGGTCCAGTTGATGTTATCTACCCTGGAAGTGAAGTTCCAGAGTGGTTCATGTACAGGACAAAACAGGCTTCAGTAACTGTTGATCTCTCTTCTGCTCCACATTCCAAGTTTATGGGTTTCATATTCTGTGTCATTGTTGGTCAGTTCCCATTAGATGACAGCAACTTCATTGGATGTGATTGTTACTTGGAAACTGGTAATGGTCAAAGGGTCACCCTTGGTAACATGGATGCATGGTCTAGTATACATGCATGTGAATTTTTCTCTGACCATGTGTGCTTATGGTATGATGAAAGTTGTTGTCTGCAAAACCGTGAATGCACAAATGAAAGCGTGGAAGAACTTATGGCTAGTTATAGTCCAAAGATTTCATTTGAATTTTTTGCTCAAAGTGGAAGCACTTGGAAAAAGCGAGAGGATATTATGATTAAAGGGTGTGGAGTATGTCCAATATTTGACACAGAATATTGTAATTTCATTCAACAAATGGAATTGGAGTTGGAATCGACATTGCAATCTATAGCGACTGGAATGTCAGTTGCATGCTCTGATATGAAAGAAATGCTCACTCCAAAACTGCAATGCAGGAAATTCTTTCCACCCCTTCAAATTGGAACTTGGAAGAATGCAACACAGGGGTTGAAAGATATTGTTCCTATGAGTTTTTGA 3483 0.375 MESSSSSHVPRIKYDVFISFRGTDVRSGFFSHLKKELKQKQVDAFVDDRLEGGHEISPALVKAIEGSLISLVIFSKDYASSKWCLEELVKIIECMERNKQIVIPVFYNIDPSDVRHQKGTYGDALAKHEKYRGNIAKVQNWRSALNKTANLSGFHSSKFGDEVELIEEIVKCLSSKLNLMYQSELTDLVGIEERIADLKSLLCLGSTLDVLVIGIWGMGGIGKTTIAAAVYNHLCFEFEGCCFMANIREESEKHGLINLKNKILSILLNENNLYIGTPNGVPPYVKRRLVRKKVLLVLDDISDSEQLENLVGALDWFGSGSRIIVTTRDKQVLGKKVDTIYEAKALNTEEAIQLFIMNAFEHRFLDMDWVELSRRVIKYANGNPLALKVLGSFLYGKSKIEWESQLQKLKKMPHSKVQNVLRLTYDRLDREEKNIFLYIACFLKGYEVHRVIVLLDACGFSTIIGLRVLKDKALIIEAKGSGKSIVSMHDLIQEMGWEIVREECIEDPGKRSRLWDPNDIHQVLTNNTGTKAIQSITLNVSKFDELSLSSRVFASMKQLKFLNFNQHYGDEQILYLPEGLASLPNNMKLFHWVSYPLKSLPQSFRAENLVELKMTWSRVEKLWDGIQNLEHLKKIDLSNSKYLLELPDFSKASNLEEVELYACRNLRNVHPSILSLKKLVRLNLFYCKALTSLRSDTHLRSLRDLFLGGCLRLKDFSVTSENMKDLILTSTAINELPSSIGRLKKLETLTLDHCKSLNNLPNKVAHLRSLRALHIHGCIQLDASNLHILVNGLGSLETLKLEECCNLFEIPDNISLLSSLRELLLKGTDIERFPSSIKHLSKLEKLDIKGCKRLRYLPELPPSIKELYATNCSSLETVMFTSRAEELLQLQAFKIHTQFQNCVNLDEYSLGGIGVNAHVNMKKLAYDNLSTIGSKFIDGPVDVIYPGSEVPEWFMYRTKQASVTVDLSSAPHSKFMGFIFCVIVGQFPLDDSNFIGCDCYLETGNGQRVTLGNMDAWSSIHACEFFSDHVCLWYDESCCLQNRECTNESVEELMASYSPKISFEFFAQSGSTWKKREDIMIKGCGVCPIFDTEYCNFIQQMELELESTLQSIATGMSVACSDMKEMLTPKLQCRKFFPPLQIGTWKNATQGLKDIVPMSF. 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08602 1160 Gene3D - 180 340 IPR027417 -
Seca3g08602 1160 PRINTS Disease resistance protein signature 288 302 - -
Seca3g08602 1160 PRINTS Disease resistance protein signature 838 854 - -
Seca3g08602 1160 PRINTS Disease resistance protein signature 212 227 - -
Seca3g08602 1160 PRINTS Disease resistance protein signature 380 394 - -
Seca3g08602 1160 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Seca3g08602 1160 Gene3D - 11 179 IPR035897 -
Seca3g08602 1160 Gene3D Ribonuclease Inhibitor 511 721 IPR032675 -
Seca3g08602 1160 Gene3D Ribonuclease Inhibitor 722 912 IPR032675 -
Seca3g08602 1160 Pfam TIR domain 13 190 IPR000157 GO:0007165
Seca3g08602 1160 SUPERFAMILY L domain-like 488 897 - -
Seca3g08602 1160 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Seca3g08602 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Seca3g08602 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 771 IPR044974 GO:0006952
Seca3g08602 1160 SMART till_3 13 151 IPR000157 GO:0007165
Seca3g08602 1160 Gene3D - 345 429 IPR042197 -
Seca3g08602 1160 Pfam C-JID domain 945 1091 IPR045344 -
Seca3g08602 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Seca3g08602 1160 Pfam NB-ARC domain 196 419 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08602 Seca-Chr3 219988999 219995234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08602 14 846 WRKY Transcription Factor Family AT4G12020 33.333 7.37e-121 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08602 - - ccaj:109805840 1880.92