Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08595 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAAACAGAACTGAAATTGGAACCAATTACCCTCAACAATACTTTGCTCCACCAGAAACTCAACCTCCAGCTAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATCGCCTTGTCTCCAAAGACTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTTCAACTCCACAGAAGAGGGCACAATTTACCATGGAAACTGAAGCAGAGAACAGGCAAAGAGATAAGGAAGAAAGTATATGTGTGCCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTGGGGGACTTAACTGGAATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGGTATGCCAGGTATACCCAACCCACTTCTTCACTCTCCACCACCACCACCTCAACCTGTTGTCTCTCTCCAAACTCCTCAAGATTTTCACAATTTCCCAAAGAAAGAGCAGCAAAATTTCACCTTGAGGCCAGAAATACCCCCATGGCTTGGTCCACCTACCATTGACCTTTCCTCTACCTCTTCCCCATCAATCTTCTCTCAAACCCCAAGATTGGATCAAGATCTAAGCCTCCATGAAAACCCTAACCCTAGTAGACTTGGTCCCACACTTCCTGCCTATCAACCAGCTGCTCCTTCACCTCACATGTCAGCTACAGCATTGTTGCAGAAAGCAGCACAGATGGGAGCAACGATGACCAAAACCAATTCCTCATCACAACCCATGATTAGGACCCACCAGCAGGCTCACGTGTCTGACAATGGTAACAACATCTCATCAAGTGGTAATTTTGGTTTGAATTTGTCCTCATGTGAAGACCATACCCAGATGAGTACTACAGGTTTTAGCCATGGCTTGGCATCTTTTGGGAATAAAGCTGTTGCTGCTGCTGCTGCTCCTTCTTCTTTCCTTCATCATGTCATCAACTCTTTCTCTTCTGCTTCTGGGTTTGAAGGAACTTCTTTTGAGGATTCTTTTGGTGGTATTCTCAATTCAAACAAAGAAGATGGTCATTCCAACGTCATAACAAAAACAAACACCACTGATGGTGGAGGAAATAATGAAGGCTTGACGAGAGATTTCTTGGGTCTTAGACCTCTCTCTCATAGTGATATTCTCACCATTGCTGGTATGGGAAATTGCATGAACTCATCCCATGATTCCCAAAAGTGGCAAGGTTAG 1449 0.4465 MSNLTSASGEASASSGNRTEIGTNYPQQYFAPPETQPPAKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTGKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGMPGIPNPLLHSPPPPPQPVVSLQTPQDFHNFPKKEQQNFTLRPEIPPWLGPPTIDLSSTSSPSIFSQTPRLDQDLSLHENPNPSRLGPTLPAYQPAAPSPHMSATALLQKAAQMGATMTKTNSSSQPMIRTHQQAHVSDNGNNISSSGNFGLNLSSCEDHTQMSTTGFSHGLASFGNKAVAAAAAPSSFLHHVINSFSSASGFEGTSFEDSFGGILNSNKEDGHSNVITKTNTTDGGGNNEGLTRDFLGLRPLSHSDILTIAGMGNCMNSSHDSQKWQG. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08595 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 473 IPR031140 -
Seca3g08595 482 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Seca3g08595 482 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g08595 482 FunFam protein indeterminate-domain 12-like 48 116 - -
Seca3g08595 482 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Seca3g08595 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Seca3g08595 482 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Seca3g08595 482 Gene3D Classic Zinc Finger 48 115 - -
Seca3g08595 482 SMART c2h2final6 145 165 IPR013087 -
Seca3g08595 482 SMART c2h2final6 69 91 IPR013087 -
Seca3g08595 482 SMART c2h2final6 110 140 IPR013087 -
Seca3g08595 482 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Seca3g08595 482 Gene3D Classic Zinc Finger 123 202 - -
Seca3g08595 482 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08595 Seca-Chr3 219601321 219604292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08595 1 324 IDZ Gene Family AT1G55110 59.710 2.48e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g08595 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08595 K25870 - qsu:111995117 610.142