Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08590 ATGAACAACAGCATCTCAAGAAATGGTACCACCACACAGGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGCCCTAACTGCATTCTCGCACCCTATTTTCCTCACGATCGTCAAAAGCAATTTCTTAACGCTCATAAATTATTTGGTGTCGGCAAAATCAATAGTATGATCAAGAAAGTAGATCCTTCTGTCCGAGATATAACTATGGATACTGTCATCTATCAATCTGACATGCGTGCTATTGATCCCGTTGGAGGTTGTTACAGGATCATACAACAGCTTCAATCTCAAATTCAATACCGCAGAGCAGAGCTTCATTACACCCTTCAACAACTTGCTATTTTGAAAGCACAAGCTAATAATAATCATTATGAGAATGTTGTTAATGCAGACTGTAATTCTCTTCTTCCCTCAACTCATTATCTTGAACAAATGTCACAGCAGGATGAATATATTAATCCCAATTACAGTTTCAATCCTTATCAAGAAGAAGACGTGGATGTGTGGGCGAACTCTATGCCTTTGGAGTCATTAACATTGCAAGACAAGAAGGAAGAAGGAATAACTCATTATGAGAATAATGATCCGAAGCCTATTCTTGATCTCATCAAAGAAATTAATTCAGGCTGA 636 0.3884 MNNSISRNGTTTQACAACKYQRRKCGPNCILAPYFPHDRQKQFLNAHKLFGVGKINSMIKKVDPSVRDITMDTVIYQSDMRAIDPVGGCYRIIQQLQSQIQYRRAELHYTLQQLAILKAQANNNHYENVVNADCNSLLPSTHYLEQMSQQDEYINPNYSFNPYQEEDVDVWANSMPLESLTLQDKKEEGITHYENNDPKPILDLIKEINSG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08590 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 146 - -
Seca3g08590 211 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Seca3g08590 211 Pfam Lateral organ boundaries (LOB) domain 14 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08590 Seca-Chr3 219527685 219528320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08590 13 127 AS2 family AT3G13850 60.870 2.56e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g08590 LOB 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08590 - - cam:101498778 228.794