Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08589 ATGGCAACAACCAACGGAGAATTATCCCCCAGAAGGGTCCAATACCCATTAGACTCATGCTCCTACCAACTCCTCGACGAGATCGGCGCCGGTGTAAGTGCCCTTGTCTACAAAGCAATCTGCATCCCCATGAACTCTTCACCCGTCGCAATCAAATCCATTGATCTTGACCGTTCACGCCCTGACTTAGACGACGTTCGACGTGAAGCAAAAACCTTATCCCTCCTTTCTCACCCAAACATCCTCAAAGCTCACTGTTGCTTCACAGTGGACCGTCGTCTTTGGGTGGTTATGCCATTCATGGCTGGAGGCTCTTTACAATCCATCATCTCTCACTCATTCCCTGACGGCTTAACTGAACCATGCATCGCTATAGTTCTCAAAGAGACTCTCAACGCTCTCTCTTATCTCCATGGCCAAGGCCATCTCCACAGAGATATAAAAGCTGGTAACATCCTTATTGACTCCAATGGATCAATCAAGCTTGCAGATTTTGGTGTCTCTGCTTCAATCTACGAGTCCATGAGTTCCTCCTCTGGGTTCACTGAATTTGCTGGCACACCTTATTGGATGGCTCCAGAGGTTATTCACTCACATAATGGATACAGTTTCAAGGCTGATATTTGGTCATTTGGAATAACCGCTTTGGAGTTAGCACATGGAAGGCCACCACTCTCTCATCTTCCACCTTCTAAATCAATGATGCTTAAGATCACAAAACGGTTTCGTTTTTCGGATTTTGACAAATATAGAAAGGAACATGGCAAGAAATTCTCTAAGGCGTTTAAGGACATGGTGGCTTCTTGCCTTGATCAGGATCCTTCAAAGAGACCTACTGCTGAGAAGTTGCTCAAGCATCCTTTCTTTAAAAACTGTAAGGGCACGGAATTTCTAGTGAAGAATGTGCTGCAAGGATTGCCTAGCGTTGAGAAAAGGTATAAAGAGAGCAAGATTCTGCATGGAATGGATGATGATGACGACGACGATGATGATGACATGGAGCATAACGTGAAACAGAGAAGGATAAGCGGTTGGAACTTCAATGAAGATGGCTTGAAACTCGAGCCGGTTTTTCCATATGATGATACGGTTGTTAAAGAAGTCCAGTTTGAAGGAAAAACGGTTACGGATGGCAAGGTAGAGGAGCGTGCTGATGCTGTTGGGGAATCAGGGACCATGAGAGAGCAAAATCCTGATGTGGAAGTGATGGAGACGTTGAGGTCTTCATGGTTGGAAAAAGCTGGTGGTGGTGTTCAGATTGGAGGGAGAGTTGTGAATTTGAGCAACCGTGAAGCTATGTTGGCTACTTTGAATGTGTTGAAAGGGAGCTTGGAACAAGAGCTGGGACAAGTCAAGTTTCTGATGAATTTGATGCAAGGAGGAGAGGAGAGTCAGGTGGGTGATAATAGCGAGGAGAAAATGGCGCAGGAGATTTCTAGGCTGAAGACTGAATTGGAAAATGAGAGGAAGAAGAGCTTGCAGTTGGAGTTGCAATTGCAGACGTTCAAGCTTCACCTTTCTTGA 1524 0.4541 MATTNGELSPRRVQYPLDSCSYQLLDEIGAGVSALVYKAICIPMNSSPVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCCFTVDRRLWVVMPFMAGGSLQSIISHSFPDGLTEPCIAIVLKETLNALSYLHGQGHLHRDIKAGNILIDSNGSIKLADFGVSASIYESMSSSSGFTEFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKEHGKKFSKAFKDMVASCLDQDPSKRPTAEKLLKHPFFKNCKGTEFLVKNVLQGLPSVEKRYKESKILHGMDDDDDDDDDDMEHNVKQRRISGWNFNEDGLKLEPVFPYDDTVVKEVQFEGKTVTDGKVEERADAVGESGTMREQNPDVEVMETLRSSWLEKAGGGVQIGGRVVNLSNREAMLATLNVLKGSLEQELGQVKFLMNLMQGGEESQVGDNSEEKMAQEISRLKTELENERKKSLQLELQLQTFKLHLS. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08589 507 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Seca3g08589 507 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 411 IPR047173 GO:0043539
Seca3g08589 507 SMART serkin_6 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08589 507 Coils Coil 471 498 - -
Seca3g08589 507 FunFam Serine/threonine-protein kinase BLUS1 104 332 - -
Seca3g08589 507 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Seca3g08589 507 FunFam Serine/threonine-protein kinase BLUS1 11 100 - -
Seca3g08589 507 SUPERFAMILY Protein kinase-like (PK-like) 21 293 IPR011009 -
Seca3g08589 507 ProSiteProfiles Protein kinase domain profile. 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08589 507 Pfam Protein kinase domain 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08589 507 Gene3D Transferase(Phosphotransferase) domain 1 104 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08589 Seca-Chr3 219522557 219524113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08589 8 494 MAP Kinase Kinase Kinase Kinase AT4G14480 55.000 2.36e-180 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca3g08589 Pkinase 2.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08589 K08835 - gmx:100820227 682.174