Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08585 ATGGTATTGCAGCTTATTTTCCTGCTAATTAAGCTACATTTAGTTATCAGTACTCCACATCTTCATGAATATGCAGCTACCAATTTGCACCATTCAAAAATCAGACCACATTCAATTATTGCATTCCCACCAACAAAGTCATCTTCTGGAGTTCCTGCAAGCATTGCACTTCCACCTTCCAAGGCATCTTCCAGAGTTCCGGGAAGTATAGCACTTTCACCTACCAAGTCATTCCCCAAAGTTCGTACAAAGAAATGGACGCATAGTCCTGTGCATTCTCCAACATCACACCATAGACATCACTATTCCAGAACAAAGTCCAGAAACCAAATTCCTCCTGGGCCAATCTATCCAATCCATCCTCATACTCATCAAGATGCAGGTCCTCCAGTCTTGAAATCAGAACCTCCTTTCCCTTCACCTATGAGATGGGGTTTTCATGCACCTGCACCTGCACCATCACCATCACCAGCAGTTCTATCAAACCACTTAAACACACCCTCTCCTTCACCTAGAATTTCACCTCTAGGTTCATCATCAAAGAAGATGAAGACTCCACCACCAGCACATGCTTTGGCTCTGCCACCTTCACCACCTAATAAGGATTGCATGTCAATGACTTGCTCAGAGCCCTTGACCTATACACCTCCTGGATCCCCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCCACATCAGCATTGCAATATACAAGTTTTTTCCTTTGGTTTCTGAGCTAGCTGATGAAATTGCAGCCAGTGTTTTGCTGAACCGTAATCAAGTACGCATTGTGGGAGCAGATGCAGCAAGTAACCAAGTAGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGATCAAAATTTGATGACACAACAGCATTTTTAATATATAAGAAATTCTGGCACAAGGAGATTCTGACTGATGCTTCACTCTTTGGTGCCTATGAAGTACTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAACTACTTCTGGTATTGTTGTTAAACCATACCCTGGTCTTGGAAACAATGGAACAATGATGAAACCTTTAGGAGTAGATGTCTCAAAGAAGAAAAAAGAAGGAAGTGGTGGAAGAATGGTTATTATGATTGTGTTGTCATCTCTTGCTGCATTTGTTCTATTCATTGGAGTTGCCTGGTTTTGTCTGTTGAAATGTGGTTCCTGTGCTCTTGAACCTGAACAAATTCCAGACATTATATTTTCATCCTCTTCAAAGAGAACAGCTTCAGCAGGGGTTACTAGGTCTTTGAATTATGGGAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAACATATACAGGATCTGCTAAGATCTTTACTTTAAATGAAATAGAGAAAGCAACAAATAACTTTAATTCTTCAAGAATATTAGGAGAGGGTGGCTTTGGTCTTGTTTACAAAGGTAGCCTATATGATGGGAGGGATGTGGCAGTTAAGATTCTCAAAAGAGATGATCAGCATGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCTTACACCATAGAAATTTGGTTAAATTGATTGGTATATGCATAGAGAAACAGACTCGCTGCCTTGTCTATGAGCTTGTCCCTAATGGCAGTTTGGAATCCCACTTACATGGTGCTGATAAGGAAACAGATCCACTTGATTGGGATGCTAGGATGAAGATTGCACTTGGTGCAGCTAGGGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATACACAGGGACTTCAAGTCAAGCAACATCTTATTGGAATGTGATTTTACACCCAAGGTTTCAGATTTTGGATTGGCTAGAACAGCACTGGAAGAGGGAAACAAACACATCTCCACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATGTTCTTGTCAAGAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAACCTTGTTACATGGGTTCGTCCACTTCTGACAAGTAAGGAGGGTTTGCTTAAGATCATAGACCAAGTTATAAAGCCCAGCGTTTCACTTGATACTGTGGTAAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCACTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCATTGAAGCTGGTGTGCAGTGATTTTGAGGATACTAGTTATGTAAGATCAGGGAGTTTTCGAGAAGATAGTCTTCTAACTGATGTAGAAGGGAAATTATCCAGTGTTACAGGTGAGAGGATGGACTTTTCAGTGTAA 2355 0.4187 MVLQLIFLLIKLHLVISTPHLHEYAATNLHHSKIRPHSIIAFPPTKSSSGVPASIALPPSKASSRVPGSIALSPTKSFPKVRTKKWTHSPVHSPTSHHRHHYSRTKSRNQIPPGPIYPIHPHTHQDAGPPVLKSEPPFPSPMRWGFHAPAPAPSPSPAVLSNHLNTPSPSPRISPLGSSSKKMKTPPPAHALALPPSPPNKDCMSMTCSEPLTYTPPGSPCGCVWPLQVKLHISIAIYKFFPLVSELADEIAASVLLNRNQVRIVGADAASNQVEKTTVLINLVPQGSKFDDTTAFLIYKKFWHKEILTDASLFGAYEVLYVHYPGLPPSPPSTTSGIVVKPYPGLGNNGTMMKPLGVDVSKKKKEGSGGRMVIMIVLSSLAAFVLFIGVAWFCLLKCGSCALEPEQIPDIIFSSSSKRTASAGVTRSLNYGSMPGSRSMSFSSGTITYTGSAKIFTLNEIEKATNNFNSSRILGEGGFGLVYKGSLYDGRDVAVKILKRDDQHGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSLESHLHGADKETDPLDWDARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLECDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHVLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLLKIIDQVIKPSVSLDTVVKVAAIASMCVQPEVTQRPFMGEVVQALKLVCSDFEDTSYVRSGSFREDSLLTDVEGKLSSVTGERMDFSV. 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08585 784 ProSiteProfiles Protein kinase domain profile. 468 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08585 784 Pfam Protein tyrosine and serine/threonine kinase 471 741 IPR001245 GO:0004672|GO:0006468
Seca3g08585 784 FunFam receptor-like serine/threonine-protein kinase ALE2 441 543 - -
Seca3g08585 784 MobiDBLite consensus disorder prediction 148 198 - -
Seca3g08585 784 PANTHER OS01G0750732 PROTEIN 195 759 - -
Seca3g08585 784 Gene3D Transferase(Phosphotransferase) domain 1 544 757 - -
Seca3g08585 784 Gene3D Phosphorylase Kinase; domain 1 441 543 - -
Seca3g08585 784 MobiDBLite consensus disorder prediction 81 106 - -
Seca3g08585 784 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
Seca3g08585 784 MobiDBLite consensus disorder prediction 79 129 - -
Seca3g08585 784 MobiDBLite consensus disorder prediction 158 181 - -
Seca3g08585 784 CDD STKc_IRAK 474 742 - -
Seca3g08585 784 FunFam Receptor-like serine/threonine-protein kinase ALE2 544 758 - -
Seca3g08585 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Seca3g08585 784 SUPERFAMILY Protein kinase-like (PK-like) 447 741 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08585 Seca-Chr3 219314438 219319460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08585 200 773 Receptor kinase-like Gene Family AT5G56890 62.694 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca3g08585 PK_Tyr_Ser-Thr 7.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08585 - - gmx:100775318 1168.68