Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08565 ATGAGTCGCTACGACAGCCGCTCCGGAGACCCCACTTCCTACCGTGACCGAAGAAGTGACTCGGGGCTAGGTGCACCTGCACCTACAGGGTATGGTGGTTCAAGCAGAAGGGACCACGACGACGGTGGTTCCCCCAGGAAACTGAATTTGGATGGGTTGCCTCATTTCGAAAAAAACTTCTACACTGAATCGCCTTCCGTTAGGGCAATGACGGAGTCAGAGGTTAATGAGTATCGCCAACGGCGGGAAATCACCGTTGAAGGACGAGATGTTCCTAAACCTGTTAAGACCTTTCACGATGTTGGTTTTCCAGACTATGTGTTGCAAGAAGTTAAGAAAGCTGGCTTTGTCGAGCCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTGATAGGGATTGCAGAAACAGGATCTGGGAAGACACTTGCATACTTGTTGCCTGCCATAGTTCATGTTAATGCACAGCCAATTCTAGATCCTGGGGATGGACCCATTGTATTAGTTTTGGCCCCAACACGTGAACTTGCTGTCCAAATTCAACAAGAGGCTACTAAATTTGGTGCATCATCAAGGATTAAGAGTACATGCGTATATGGCGGGGTTCCAAAGGGGCCTCAAGTGCGTGATCTCCAGAAAGGCGTTGAAATTGTAATTGCTACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACTTACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAAGATCTTTTCATGTTGGGACATGTTAG 933 0.4737 MSRYDSRSGDPTSYRDRRSDSGLGAPAPTGYGGSSRRDHDDGGSPRKLNLDGLPHFEKNFYTESPSVRAMTESEVNEYRQRREITVEGRDVPKPVKTFHDVGFPDYVLQEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCVYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVRSFHVGTC. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08565 310 CDD DEADc_DDX5_DDX17 107 302 - -
Seca3g08565 310 MobiDBLite consensus disorder prediction 1 53 - -
Seca3g08565 310 Pfam DEAD/DEAH box helicase 120 291 IPR011545 GO:0003676|GO:0005524
Seca3g08565 310 SMART ultradead3 115 307 IPR014001 -
Seca3g08565 310 FunFam probable ATP-dependent RNA helicase DDX17 58 304 - -
Seca3g08565 310 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g08565 310 Gene3D - 59 304 IPR027417 -
Seca3g08565 310 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Seca3g08565 310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 302 IPR014001 -
Seca3g08565 310 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Seca3g08565 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 302 IPR027417 -
Seca3g08565 310 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08565 Seca-Chr3 218962603 218968009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08565 83 302 Eukaryotic Initiation Factors Gene Family AT3G19760 33.032 1.39e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08565 K12823 - gmx:100781619 551.977