Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08564 ATGGATGGAAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATTACCAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGAATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCACCGCATTGGTCGCACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATTACCATACTTGAGGAAGCTGGACAGAGAGTGAGCCCTGAATTGGCAGCAATGGGGCGCGGTGCACCTCCTCCGCCTTCAGCAATCAGGAGGCTTCCGAGACCGTGGGAAGGGTTATGGCAGTGGTCGCCCGTGGAACTGATTGAGTAA 474 0.4726 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMNVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSAIRRLPRPWEGLWQWSPVELIE. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08564 157 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 126 - -
Seca3g08564 157 CDD SF2_C_DEAD 2 97 - -
Seca3g08564 157 Gene3D - 1 128 IPR027417 -
Seca3g08564 157 SMART helicmild6 17 88 IPR001650 -
Seca3g08564 157 Pfam Helicase conserved C-terminal domain 3 88 IPR001650 -
Seca3g08564 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 123 IPR027417 -
Seca3g08564 157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 127 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08564 Seca-Chr3 218960690 218962250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08564 4 108 Eukaryotic Initiation Factors Gene Family AT3G19760 35.652 2.67e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08564 K12823 - mof:131164910 256.529