Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08556 ATGGAGGAAACGCCTAAGCTTATCCATGGAACAATTGAAGCTACAATCTTCAATGCCACACCTTACTCACCATCATTTCCCTTCAATTTCTTTTTTTTTTTTCAGTGTTTATGTACAAATGGAAGGCCTGCTTATGTGACCATCAAGATAAACGACAAGAAAGTGGCTAAAACGACCCTAGAACGTGAACGTGTATGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCATCTATCACCATTACACTGAAAACTTCATGTTCCACATTGGGGAAGTTTCATATCCAGGCCAAGCAGTTGAAGGAAGAAAGTTTGATCAATGGTTTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAACTCAGAACTAAAATTAAGGTTCATACTATGGTTCAAGCCAGCATATTTGGAACCAAGTTGGGCAAAGCTACTGAGTAATGGGGAATTTCAAGGGCTGAGGGATGCTACTTTCCCACAAAGGTCCAATTGTCAGGTTAAGCTCTATCATGATGCTCATCATTCATCTGCTTTCCAACCTCCTTTTGATCTATGTTGTACTCCAAGGAAGCTTTGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTAGTTTATATTGCAGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAGAGAAATAAAGCTGGGTGAGTTATTGAAGAGGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCCTTGCCTTTTATAAAGAACAAAGGTGTTATGAACACCCATGATGAAGATGCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGGTTACACCACAAGTTCCCCACACTCTTTGCACACCATCAGAAGACCATAACTGTGGACAGTAAAGCACCTAACTCAGTTAATGAAAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGATGGAAGATATGATACAGAGAAACATTCATTGTTTCAAACACTAACTGAGGAATCCCATCACTATGACTTCTACCAGACAAACATTGCAGGTGCTAGCCTCAACAAAGGAGGGCCAAGAGAACCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGACCCTTCTCTTTTAGTACCTGCTAACACCTTAGCAAATCTCAATCCTATTTGCTCAAGCACTCCTACAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGCAAGCCAGTTGTTTAGAAAACTAACTATGGAGAGTAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGCGCTGATAGGTTTATATACATTGAAAACCAATATTTCATTGGGGGATGTCATTTGTGGCAGAAAGATAAGCATAGTGGCTGCAGGAATCTGATTCCCATTGAAATTTCTCTCAAGGTAGTCAATAAAATTAAAGCAAAAGAGAGATTTGCCGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTAATTGGTGAAGCAATAACAGAAAGTGGTGAGCCAGGGCATCCAAGAGACTACTTGAATTTTTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAAGAGAGTATCTTCCACCACATTCTCCTCATCCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGATGACCTATACATACTAATAGGATCAGCAAATGTTAACCAAAGATCCATGGATGGTCAAAGGGACACTGAAATTGCCATAGGGGGCTACCAGTCTCAAGATGGAGCTGATCACCACCACATGAGCCAGGGTGATGTTCATGCATACAGAATGTCACTGTGGTATGAGCACACTGGGAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGAAGAGAATGTGTTCAATAGGAGATCAAATGTGGAAAATCTACAGTAGTGAAGAAATTATGGACATGGAAGGTGTGCACCTTGTAACATACCCTGTGAAAGTAACCCAACAAGGGTCAGTGGAGGACCAGACTGATGGTGAGGATCATTTTCCTGATACAAAATCTCTAGTGAAGGGGAAGAGATCAAAATTGTTACCCCCTATCTTTACCACTTAG 2295 0.4092 MEETPKLIHGTIEATIFNATPYSPSFPFNFFFFFQCLCTNGRPAYVTIKINDKKVAKTTLERERVWNQTFQIQCAHPADSSITITLKTSCSTLGKFHIQAKQLKEESLINGFFPLLMENGKPNSELKLRFILWFKPAYLEPSWAKLLSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSAFQPPFDLCCTPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKRKAEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDSKAPNSVNEREIMSFLGGLDLCDGRYDTEKHSLFQTLTEESHHYDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLANLNPICSSTPTERNWKVQVYRSIDHVSASQLFRKLTMESSIHEAYVEAIRRADRFIYIENQYFIGGCHLWQKDKHSGCRNLIPIEISLKVVNKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAITESGEPGHPRDYLNFFCLANREKKEKREYLPPHSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGADHHHMSQGDVHAYRMSLWYEHTGSAEELFLEPESLECVKRMCSIGDQMWKIYSSEEIMDMEGVHLVTYPVKVTQQGSVEDQTDGEDHFPDTKSLVKGKRSKLLPPIFTT. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08556 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 301 338 IPR001736 GO:0003824
Seca3g08556 764 Gene3D Endonuclease Chain A 181 423 - -
Seca3g08556 764 SMART pld_4 301 338 IPR001736 GO:0003824
Seca3g08556 764 SMART pld_4 608 635 IPR001736 GO:0003824
Seca3g08556 764 PIRSF PLD_plant 1 764 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca3g08556 764 Pfam C2 domain 44 115 IPR000008 -
Seca3g08556 764 Gene3D Endonuclease Chain A 424 659 - -
Seca3g08556 764 SUPERFAMILY Phospholipase D/nuclease 150 438 - -
Seca3g08556 764 SUPERFAMILY Phospholipase D/nuclease 427 693 - -
Seca3g08556 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 608 635 IPR001736 GO:0003824
Seca3g08556 764 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 131 IPR035892 -
Seca3g08556 764 PANTHER PHOSPHOLIPASE D 7 746 IPR015679 -
Seca3g08556 764 Pfam Phospholipase D C terminal 681 753 IPR024632 -
Seca3g08556 764 Pfam Phospholipase D Active site motif 611 635 IPR001736 GO:0003824
Seca3g08556 764 Pfam Phospholipase D Active site motif 302 338 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08556 Seca-Chr3 218879098 218882597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08556 31 764 Phospholipase D Gene Family (Wang group) AT1G55180 63.284 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08556 K01115 - gmx:100807431 1402.11