Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08553 ATGGACGCCAAAGCAGACCCTCCTCAAAACCCAGCCAAAAGACACAAATGCTCAGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACCTCATACCACTCTGTGCATCAGCCTAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAATTTGTTCAAAGGTTTTCTCTCAACAGGGTTGTCAACTTTGCTTGACACTATTTGATAACCCCAGGTCTCTCACTGAGCATAGAGAAACATGTCGCCTATCTGCCCCTGTTCCTCTAGGTACAAGCGCATTGCCTTATATAAGCCCTCAATTCGATTCGTCTGATGAAAACCTTGCTGACAGGCGCCCTGGAGCAATGGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCATTGGAACTTTGCGCTAGAGTATGCTTAATTGATGAAGATGAGAACTTAATCTTCCACACATATGTACGGCCTCAACTCCCTGTTACTAATTATAGATATGATATAACTGGGTTGACAGAAGAGCATTTTAAAGATGCCATGCCACTTAAGAAAGTTCAAGAAAAGATATTGCAAATTTTGTACAATGGAGAATCCATTGGCAGAGCTAGATTGGACGGTGGAAAGGCCAGGTTTCTTGTGGGGCATGATTTAGCACATGATTTAGATTGCTTGAAAATGAATTATCCTGATCACATGCTGAGGTAG 756 0.422 MDAKADPPQNPAKRHKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGICSKVFSQQGCQLCLTLFDNPRSLTEHRETCRLSAPVPLGTSALPYISPQFDSSDENLADRRPGAMAIDCEMVGGGSDGSLELCARVCLIDEDENLIFHTYVRPQLPVTNYRYDITGLTEEHFKDAMPLKKVQEKILQILYNGESIGRARLDGGKARFLVGHDLAHDLDCLKMNYPDHMLR. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08553 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Seca3g08553 251 Gene3D - 132 251 IPR036397 GO:0003676
Seca3g08553 251 Gene3D Classic Zinc Finger 2 65 - -
Seca3g08553 251 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Seca3g08553 251 SUPERFAMILY Ribonuclease H-like 137 247 IPR012337 -
Seca3g08553 251 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 247 IPR047021 GO:0004527
Seca3g08553 251 Pfam Exonuclease 137 246 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08553 Seca-Chr3 218802066 218804256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08553 1 251 C2H2 Transcription Factor Family AT3G27970 51.793 7.29e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08553 K18327 - gmx:100788682 452.981