Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08549 ATGAGTCGAGAACAACAGAAGCGAGGGAAGCAGGAAAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTCAAGGCTTCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTAACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTGGTGGTTGTACCACCGCAAAGTTCAGGCCGAAGATTGTGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAATAGTCACAAGAAGTCGACTCCAGGAACAACAAGTTCAGAACAGAAGAATGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCAAACAAGATAAATGTCAAGATTAAAATTGTATCTGGATCACCCTGCGGATCAGTGGCTGCAGAAGCCAAGAAAGCCCAGGCCAACTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAAAAACAGTGCATGGAAGAGCTGCAGTGCAACATTGTGGCTATGAAGCGTTCCCAGCCTAAGGTACTCCGCTTGAATTTGGTTGGATCACAAAAAAAGGATCTTGAAGAAGCTTGTTCATTACCTTCTGAGCGAGGTGAGATGCCTGGAAAACTGCCGAAAAAGAAGAATGATACTTTAAATTCCATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCCGAGCTAGGGACTCCATTTACTGCAACTGAAGCTGGTACCTCATCAGTTTCAAGCTCTGATCCAGGAACTTCACCTTTTTTTATCTCTGAGATGAATGCTGAGTCAAAGAAAGAGGAAACCATCAAAGAAAATCAAGAACTCGATGATACTATTTCAGACACAGACAGTGAGCATTTGTCCTCATCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACTGATTTACTTTTACATCAACAATCATCTCAACATACAGAAGAAAGATCAGAGAGATCTCATAATAGGCTTCAATCGTCTACAACTAGAGCTCTGCTAGAGAAATTCTCAAGGCTTGACAGAGAAGCTGAAATTGAAATTTCAAACTACAAGACTGACTTGGATTTTGGTGGAAATGTAAGAGACGCAATAGCATTATCTAGAAATGCTCCGCCAGGTCCCCCTCCGTTATGTTCAGTATGTCAACACAAGGCTCCTGTTTTTGGAAAGCCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTTGCCACTGGTGGATTTTCGCAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATGTTGAATTTTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTGGTTATGTTGATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAACGGAAACCATTAGAATGGTCTGCACGGCAAAAAATCGCTGTTGGAGCTGCTCGAGGGTTGAGATATCTTCATGAAGAGTGCAGGGTGGGTTGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACTGAAAAGGCTGATGTTTATTCCTTTGGGGTGGTATTAGTGGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCAATCGACCCAAGGGACAACAGTGTCTTACGGAGTGGGCACGGCCACTGTTAGAAGAATATGCCATTGAGGAGCTGATTGATCCAAGGATGGGAAGTCACTACTCAGAGCATGAGGTCTCTTGCATGCTACATGCTGCATCATTATGCTTAAGGCGAGATCCTTATTGTAGACCACGCATGTCACAGGTTCTTCGAATACTAGAGGGTGACATGGTCATGGACTCAAATTGCATTTCAACTCCTGGTTATGATAACCGGAGTGGTTGA 2088 0.4411 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPPQSSGRRLWGFPRFAGDCANSHKKSTPGTTSSEQKNDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGSVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVAMKRSQPKVLRLNLVGSQKKDLEEACSLPSERGEMPGKLPKKKNDTLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEMNAESKKEETIKENQELDDTISDTDSEHLSSSSASLRFQPWITDLLLHQQSSQHTEERSERSHNRLQSSTTRALLEKFSRLDREAEIEISNYKTDLDFGGNVRDAIALSRNAPPGPPPLCSVCQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRMGSHYSEHEVSCMLHAASLCLRRDPYCRPRMSQVLRILEGDMVMDSNCISTPGYDNRSG. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08549 695 Gene3D Transferase(Phosphotransferase) domain 1 480 685 - -
Seca3g08549 695 MobiDBLite consensus disorder prediction 190 287 - -
Seca3g08549 695 MobiDBLite consensus disorder prediction 304 324 - -
Seca3g08549 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Seca3g08549 695 Gene3D Phosphorylase Kinase; domain 1 375 479 - -
Seca3g08549 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Seca3g08549 695 MobiDBLite consensus disorder prediction 306 320 - -
Seca3g08549 695 MobiDBLite consensus disorder prediction 213 255 - -
Seca3g08549 695 Pfam Protein kinase domain 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08549 695 MobiDBLite consensus disorder prediction 257 280 - -
Seca3g08549 695 Coils Coil 255 275 - -
Seca3g08549 695 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Seca3g08549 695 PANTHER OS01G0750732 PROTEIN 164 681 - -
Seca3g08549 695 CDD STKc_IRAK 410 676 - -
Seca3g08549 695 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08549 695 SUPERFAMILY Protein kinase-like (PK-like) 388 678 IPR011009 -
Seca3g08549 695 FunFam Dual-specific kinase DSK1-like 12 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08549 Seca-Chr3 218691019 218697159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08549 384 683 Trihelix Transcription Factor Family AT1G70460 53.420 3.72e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca3g08549 Pkinase 5.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08549 - - gmx:100789216 1280.39