Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08540 ATGCAAAATTGTCGTGTGAATTTAATTAATAATGCAGGAGTAAGCAAAGATGGACAGATCCGACACTTCTTTCATAGGCCTTCTAAAGCATACATAACTGGAACAAGGAAAAGAAGAAAGGTTCACACAAATGAAGATGGAAGTGAAACAAGATGGCACAAAACAGGGAAAACTAGAGCAGTATATGCTGGTGGAGCAGTGAAAGCTTTAGATGGCCTTGTGACATTGGAGTTTCTAGAAAACGCAAGGCCCCACCCCGGTGAGAAGCCAGAGCCCGTAAGGACACACCTCCGCAACATGATCATTGTGCCTGAGATGATTGGTAGCATTATTGGTGTCTACAATGGGAAGATATTCAATCAAGTTGAAATTAAACCAGAAATGTGA 387 0.416 MQNCRVNLINNAGVSKDGQIRHFFHRPSKAYITGTRKRRKVHTNEDGSETRWHKTGKTRAVYAGGAVKALDGLVTLEFLENARPHPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKIFNQVEIKPEM. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08540 128 SUPERFAMILY Ribosomal protein S19 85 128 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca3g08540 128 Pfam No apical meristem (NAM) protein 15 80 IPR003441 GO:0003677|GO:0006355
Seca3g08540 128 Gene3D 30s Ribosomal Protein S19; Chain A 21 128 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca3g08540 128 PRINTS Ribosomal protein S19 family signature 115 127 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g08540 128 PRINTS Ribosomal protein S19 family signature 95 114 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca3g08540 128 SUPERFAMILY NAC domain 15 82 IPR036093 GO:0003677|GO:0006355
Seca3g08540 128 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 69 IPR044799 GO:0003700
Seca3g08540 128 Pfam Ribosomal protein S19 80 128 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08540 Seca-Chr3 217695903 217697922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08540 4 76 NAC Transcription Factor Family AT4G28500 63.514 1.93e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08540 - - cave:132169802 116.701