Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08539 ATGCAAGACCCAACGGTATTCCAATCCATCCAACCCCACTTTCCTGAACAAGAACAGCTTAAATGCCCACGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTACTCTCAGAAACATCCCTGTTGGGGGTGGAAGTAGAAAGAACACAAAACGATCATCCACTAACTCCAAACGCTCTGCATCATCATCTTCTCCATCACCTTCAGTTTCCTCTGCCTCCTCTGCAGCCCAAGCTACAGCTCCAGAATGTGACCCGACCCGGATTTATAGCAACCCGGTTGGTCAAGACCAGAGGTTACCTATCATTGGTGGGAGTTTCAGTTCCCTTCTGGCATCAACTGGGCATTTGGGGAACCTGTTGGAAGGTCTGAATTCAAGTGGGTCAAATCTAAAAATGGTGCAAATGGAAGAATTTAGGGAGAATGCTGGTTCTGGCTCACTGGTGAATCCGGATTCGGGTAGGAATCCCGGGTTGAAGATGCAGAGCAATGCAGAGAGCTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGTAGTAATGGGTGGTCTAACCTTGCAATATACACTCCTGGGTCAAGCTTTCAGTAG 669 0.4709 MQDPTVFQSIQPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKNTKRSSTNSKRSASSSSPSPSVSSASSAAQATAPECDPTRIYSNPVGQDQRLPIIGGSFSSLLASTGHLGNLLEGLNSSGSNLKMVQMEEFRENAGSGSLVNPDSGRNPGLKMQSNAESFLSMQNGDSSCWNGSSNGWSNLAIYTPGSSFQ. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08539 222 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Seca3g08539 222 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Seca3g08539 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 173 IPR045174 GO:0003700|GO:0006355
Seca3g08539 222 MobiDBLite consensus disorder prediction 61 115 - -
Seca3g08539 222 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Seca3g08539 222 MobiDBLite consensus disorder prediction 69 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08539 Seca-Chr3 217687174 217687842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08539 5 144 C2C2-Dof Transcription Factor Family AT1G51700 58.219 1.22e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g08539 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08539 - - gmx:100798927 280.411