Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08534 ATGGCCACAGTCCCCGGACAACTCGTTTGGGAGATCGTGAAGAGGAACAACTCTTTCTTGGTGAAAGAGTTTGGCAGGGGAACCCAGAGTGTCCAGTTCAGCAAAGAACCCAACAATCTCTACAACCTCAACTCTTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCTGCGGGTAAAGATCAGTCTGTAGTGTTGGCAACGACCAAGACAAAGAAGCAAAACAAGCCTGCAGCTTTGCTTCACAAATCTGTCATGAAGAAGGAGTTCCGGAGGATGGCAAAGGCTGTGCAAAATCAGGAGGTATGTGGTTTATTAAAGATTTTTGAAACTCCATCTTTCCTGATTTTGCCCCGGCGGTGA 375 0.4587 MATVPGQLVWEIVKRNNSFLVKEFGRGTQSVQFSKEPNNLYNLNSFKYSGLANKKTVTIQPAGKDQSVVLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVQNQEVCGLLKIFETPSFLILPRR. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08534 124 Pfam Ribosomal L28e protein family 8 104 IPR029004 -
Seca3g08534 124 Gene3D - 1 117 - -
Seca3g08534 124 PANTHER 60S RIBOSOMAL PROTEIN L28 1 104 IPR002672 GO:0003735|GO:0005840|GO:0006412
Seca3g08534 124 FunFam 60S ribosomal protein L28 5 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08534 Seca-Chr3 217597589 217600762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08534 1 106 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 74.528 6.39e-54 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08534 K02903 - gmx:100500189 199.904