Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08529 ATGTGGACACCTTATAACTCAATTGACTGGAAACAGATAGATACAACACTCACCATAGACAGGGGAGCACCTTCATTCAATTTTTTACCATTACCACCCTCCATGGTCACTAGAACAGCAGCAATTCCAGCTAATGTCAGCAACAATATAGAGTTCTACTTCCTTCCCAAATATAATGCCTCTACATATTATATATACTTCTACTTTGCTGAAATCCAGAAGCACCAAACAAATCAAATTAGAGAGTTCAACATTTTTGTAAATGGGGAGCTTTTTAATAATGCACCTGTCAATCCTGTATACCTGCAGAGCCTGTATTATGTGTCAGCTATAAGTGTACCTCGGTTGGAACTTTGGATTAATAAAACTAGTAGATCAACTCTTCCGCCTCTCCTCAATGCCATTGAGATATATATGACAAAGGACTTCTTACAATCAGAAACACATCAAACAGATGTTGATGCTATCATAAATGTCAAGTCAATCTATGGGATCCAGAGAAACTGGCAAGGAGATCCTTGTATTCCAGTGGCTTACTTGTGGGATGGTCTTAACTGCAGCTATGCTGGATCTGGTTCACCAAGGATCATATACTTGAACTTATCTTCCAGTGGTTTGATTGGAAATATAGCTCCTGGCATATCCAATCTGAAGGATTTGTCAAACAACAATTTGACTGGGGCCGTGCCTGATTTCCTATCCCAGCTGCGTTTCTTGAGAGTTCTAAAACTGGAAGAAAATCAGCTATCAGGAACAATTCCAATGCAACTCACTGTGCGTTCAGAGAATGGTTTGCTTGAATCCAATTTTGGTGAAAATCCAAATCTTTGCTCTCCAGGTCCATGCAATAATAGGAATGGGAATAAGTTTGTAGTCCCACTGGTGGCATCGGTTGGTGGAGCTTTCATGATACTAGCAGTCGCAGTGATTTCTTTCCAAATATACAACAGGAGACAAGTTTCCCCTCATTCAAGCACGATGCGTATTTATTCTAGAATAAAGGAGGAACTAGAGGCAAATAAACAAGAATTCACCTATGCTGAAGTATTGAGAATGACCAAAAACTTTGAAAAGGTTGTGGGCAAAGGAGGATTTGCAATAGTTTACCATGGTTTTGTAGATGATATTGAGGTAGCTGTCAAAATGCTCTCTCCTTCAGCTCAAGGTTATCTACAATTTCAGGCGGAGGCTAAACTGCTTGCTATAGTTCATCATAAATGCTTGACTGATCTTATAGGATACTGTGATGATGGTTCCAACATGGCTCTCATTTATGAGTATATGGCAAATGGAGACTTAGCGAAGCATTTATCAGAAAAAAGTGAAAATATATTGGGTTGGAATCAACGACTTCAAATTGTAGTGGATGTTGCAGAAGGATTGGAGTATTTGCACCATGGCTGCAACCCACCAATTGTTCATAGAGATGTTAAATCTAAAAACATCTTACTAAATGAGAAATTCAAGGGTAAACTAGCTGATTTTGGGTTATCAAAGATCTTTCCTAATGAAGGTGACACCCATATCTCCACTGTGGTTGCTGGTACCCCAGGATATCTTGACCCAGAGTACAATAGATTAAAAAAGTTAAATGAAAAAAGTGACGTTTTTAGTTTTGGAGTAGTTTTGCTTGAGATAATTACGGGCCAACCTGCTATAAGAAAAAGTGAAGAGAAAACTCATATAATTGAATGGGTTCGTTACATGCTACTCGAGAAGGAGGTCAAATATATTGTGGATTCTAGATTGCAAGGAGAATTGGATATTGATTCCGCAAAGAAAGCCTTAGATATTGCAATGGCTTGTGTAGCACCCACTTCCATTAATAGGCCAACCATGAGCTATGTAGTGATGAAATTGAAACAATGTTTAGCAAATAAGATGACCGATCCATCTGAATTTGACAATCATGAAAGTGTATCGAGAAGCTTAACCACTACCTCCTTTGATAGAATCAGTGGAGAGAGCTCTCTTGAAAGGTAG 1983 0.3873 MWTPYNSIDWKQIDTTLTIDRGAPSFNFLPLPPSMVTRTAAIPANVSNNIEFYFLPKYNASTYYIYFYFAEIQKHQTNQIREFNIFVNGELFNNAPVNPVYLQSLYYVSAISVPRLELWINKTSRSTLPPLLNAIEIYMTKDFLQSETHQTDVDAIINVKSIYGIQRNWQGDPCIPVAYLWDGLNCSYAGSGSPRIIYLNLSSSGLIGNIAPGISNLKDLSNNNLTGAVPDFLSQLRFLRVLKLEENQLSGTIPMQLTVRSENGLLESNFGENPNLCSPGPCNNRNGNKFVVPLVASVGGAFMILAVAVISFQIYNRRQVSPHSSTMRIYSRIKEELEANKQEFTYAEVLRMTKNFEKVVGKGGFAIVYHGFVDDIEVAVKMLSPSAQGYLQFQAEAKLLAIVHHKCLTDLIGYCDDGSNMALIYEYMANGDLAKHLSEKSENILGWNQRLQIVVDVAEGLEYLHHGCNPPIVHRDVKSKNILLNEKFKGKLADFGLSKIFPNEGDTHISTVVAGTPGYLDPEYNRLKKLNEKSDVFSFGVVLLEIITGQPAIRKSEEKTHIIEWVRYMLLEKEVKYIVDSRLQGELDIDSAKKALDIAMACVAPTSINRPTMSYVVMKLKQCLANKMTDPSEFDNHESVSRSLTTTSFDRISGESSLER. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08529 660 Gene3D Transferase(Phosphotransferase) domain 1 428 646 - -
Seca3g08529 660 SMART serkin_6 354 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08529 660 SUPERFAMILY L domain-like 157 257 - -
Seca3g08529 660 ProSiteProfiles Protein kinase domain profile. 354 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08529 660 FunFam Leucine-rich repeat receptor-like kinase 151 278 - -
Seca3g08529 660 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Seca3g08529 660 Gene3D Ribonuclease Inhibitor 154 267 IPR032675 -
Seca3g08529 660 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
Seca3g08529 660 Pfam Malectin-like domain 1 139 IPR024788 -
Seca3g08529 660 PANTHER OS07G0107800 PROTEIN-RELATED 1 624 - -
Seca3g08529 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Seca3g08529 660 SUPERFAMILY Protein kinase-like (PK-like) 339 620 IPR011009 -
Seca3g08529 660 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 428 632 - -
Seca3g08529 660 Pfam Protein tyrosine and serine/threonine kinase 356 620 IPR001245 GO:0004672|GO:0006468
Seca3g08529 660 CDD STKc_IRAK 360 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08529 Seca-Chr3 217392108 217404954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08529 1 632 Receptor kinase-like Gene Family AT2G19210 46.049 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca3g08529 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08529 - - gmx:100778537 1007.67