Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08528 ATGGAGGGTCTGAGTTGGGATGCATCACAACTTGTTGCAAACATACCAATCTTGTGGAGCACACAGCCACAAGACCTTGAAGAAGCCTACAACATGCCCAACCTAAGTTCAAGTGTTCTTAATCAAACATGCCAGCTATATTCCATTTCTGAAAAAGTGAGTGATATGGTTCAATCAACAATATCTGCCCCCACCTCTGAGATAATGAGTATGATGCCAAACACAAATCTTTCACAGAGAACAGAAGCCTTGTCTGTGAAATCAGGATCAGGAGCTGTAACCAGTTGGGAAGAAGCTTTAACAATATCTCAATCATGCCAGTCCCTTTCAGTCAATTTGAATCCAACTAGCAATTATGTGCCAGATTTCAACATGGCCCACCAGCAACAACAACAACAACTTATCAACAGCACACAAAACATCAAGGCTACCTGCTCTCTTGAATCACTTGATTGCTTGCTTTCAGCCACTAATAGTAACACTGACACATCTGTTGAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGCAGTGCAGTTTCCTCTGGTGAATCTGATAGTAATGCTTCAAATGCTAGAAACAAAGACATACTGGATGAAACAGTATCTCAAAGTTCCTCTGATCAAGGTAAAATTATAGATTCTAATGTTCATTGCAAAAAAAGGAATAATGAGGTGATCAGAGTTCCTGCAAGTGATCACTACTTCAGCATTGCTCAAAATTCTGATTCAGCTACTGAAGGTGGTTTCAAGCTTATCTCAGAGAATCCACAAAAATCCAAGAAACCCAGATGGGATAAGCTTCCTGGTTCATCAAACATCAATTTCCAGCAGCCAAATTCATCTGTTTCACCTTCCTTTGAAGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGAACTTAGGCTTGGAAGTGGTGGAAAAACCAAAAAGGAAGAATGTGAGGATATCAAATGATCCACAAACTGTGGCTGCAAGGCAAAGGAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTCAGGTCACAAGTCAAAGCATTAGAAAATCTAGGGAACAAGCTTAACACAATGAATTGTCCTCCTACTAGTATAGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAAACAATTTCCCTATTCAAAACCCTAGCAGCCACATCCAACATTCTGGGGGTTGA 1317 0.4085 MEGLSWDASQLVANIPILWSTQPQDLEEAYNMPNLSSSVLNQTCQLYSISEKVSDMVQSTISAPTSEIMSMMPNTNLSQRTEALSVKSGSGAVTSWEEALTISQSCQSLSVNLNPTSNYVPDFNMAHQQQQQQLINSTQNIKATCSLESLDCLLSATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAVSSGESDSNASNARNKDILDETVSQSSSDQGKIIDSNVHCKKRNNEVIRVPASDHYFSIAQNSDSATEGGFKLISENPQKSKKPRWDKLPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISNDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLNTMNCPPTSIAFSFNPSFPMQNNFPIQNPSSHIQHSGG. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08528 438 Gene3D - 342 405 IPR036638 GO:0046983
Seca3g08528 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 403 IPR036638 GO:0046983
Seca3g08528 438 MobiDBLite consensus disorder prediction 279 296 - -
Seca3g08528 438 SMART finulus 343 392 IPR011598 GO:0046983
Seca3g08528 438 MobiDBLite consensus disorder prediction 257 298 - -
Seca3g08528 438 Pfam Helix-loop-helix DNA-binding domain 347 386 IPR011598 GO:0046983
Seca3g08528 438 Coils Coil 376 396 - -
Seca3g08528 438 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 157 435 IPR045843 GO:0003700|GO:0006355
Seca3g08528 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Seca3g08528 438 FunFam BHLH transcription factor 340 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08528 Seca-Chr3 217350100 217351416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08528 111 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.183 9.19e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08528 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08528 - - gmx:100793830 585.489