Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08516 ATGAACATCAATAGCAAACAAGCACTTGTTGTGGTCTTTGCATTTGTCTTCTTGGCATGGGGGAATGCACAAGATACCCTTGTGCCAGCAATCATAACATTTGGTGACTCTGCTGTGGATGTGGGGAATAATGACTATCTCCCCACTCTTTTCAAGGCTGACTACCCTCCTTATGGAAGGGACTTTCTCAACCATAAACCCACTGGGAGGTTTTGCAATGGGAAATTAGCTACTGATATTACTGCTGAAACACTGGGTTTTAAGAGTTATGCACCTGCATATCTTAGCCCTCAGGCATCAGGGAAGAACCTACTTATTGGAGCAAATTTTGCTTCAGCTGCCTCTGGATATGATGAAAAGGCTGCTATTTTGAATCATGCAATCCCATTGTCCCAACAGTTAAAATATTACAAGGAATACCAAGGCAAACTGGCCAAGGTAGCTGGAAGTAAAAAGGCAGCATCAATTGTTAAGGATGCATTGTACATTTTGAGTGCTGGCAGTAGTGACTTTGTGCAAAACTATTACGTCAATCCTTTGATCAACAAAATCTTAACTCCTGATCAGTATTCAGCATACCTTGTAGATGCATTCTCAAGCTTTGTTAAGGACTTGTATAGATTGGGAGCCAGAAAAGTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGAACTTTATTTGGATTCAATGAGAATGGTTGTGTCTCAAGAATCAACAATGATGCCCAAGGATTTAACAAAAAGATCAACTCAGCTGCAACACATCTCCAAAAGCAACTTCCTGGTCTTAAGATTGTTGTCTTTAATATTTTCAAACCTCTCTATGACCTTGTACAATCCCCTTCAAAATTCAGTTTTGTGGAGGCAAGGAGAGGTTGCTGTGGTACTGGAACTGTGGAGACAACATCCTTATTGTGCAATCCAAAATCACTAGGAACTTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTCCATCCTTCACAAGCTGCTAACCAAGTTCTAGCTGATGCATTGATTCTACAAGGCATAGCCCTTATCAGTTAA 1062 0.4124 MNINSKQALVVVFAFVFLAWGNAQDTLVPAIITFGDSAVDVGNNDYLPTLFKADYPPYGRDFLNHKPTGRFCNGKLATDITAETLGFKSYAPAYLSPQASGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKYYKEYQGKLAKVAGSKKAASIVKDALYILSAGSSDFVQNYYVNPLINKILTPDQYSAYLVDAFSSFVKDLYRLGARKVGVTSLPPLGCLPAARTLFGFNENGCVSRINNDAQGFNKKINSAATHLQKQLPGLKIVVFNIFKPLYDLVQSPSKFSFVEARRGCCGTGTVETTSLLCNPKSLGTCSNATQYVFWDSVHPSQAANQVLADALILQGIALIS. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08516 353 FunFam GDSL esterase/lipase APG 20 349 - -
Seca3g08516 353 Pfam GDSL-like Lipase/Acylhydrolase 31 343 IPR001087 GO:0016788
Seca3g08516 353 Gene3D SGNH hydrolase 21 348 IPR036514 -
Seca3g08516 353 PANTHER GDSL ESTERASE/LIPASE EXL3 14 344 - -
Seca3g08516 353 CDD SGNH_plant_lipase_like 29 345 IPR035669 -
Seca3g08516 353 SUPERFAMILY SGNH hydrolase 31 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08516 Seca-Chr3 216852886 216854800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08516 5 345 Pollen Coat Proteome AT1G75910 33.430 5.79e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08516 - - gmx:100795716 647.506