Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08509 ATGGGTAGAAAACTGGGTCAGAGTCAAGTTGGGACAACGTACCTTTGCACTCACAAGGTAATAGGTAGTAGGTACGCTTGCAAGTCTATTCCGAAACGAAAGCTTATGTGCAAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTGTCTGAACACCTTCATGTGGTGCGAATCGAAGGAACCTATGAGGATTCCTCTACTGTTCACCTGGTTATCGAGTTGTGTGAAGGAGGAAAGCTATTTGACAGGATCACGCAGAAGGGCCACTACAGTGAGAGACAAGCTGCGAAGTTGATAAAGACTATTGTTGAGGTTTTGGAGTCTTGTCATGCTCTTGGGGTTATGGATAGAGACCTTAAGCCTGAGAACTTTCTCTTTGATACTGTTGATGAGGATGCTAAGCTTAAGCCACCTTTTTGTTATGCTTCTCCACAAAATCAGCAGCCCAACAATGGCGGAGAAGAAGAGGAACGAAGAAAGAGGAACAGATGGAGACTTGACCGTTAG 522 0.4502 MGRKLGQSQVGTTYLCTHKVIGSRYACKSIPKRKLMCKEDYDDVWREIQIMHHLSEHLHVVRIEGTYEDSSTVHLVIELCEGGKLFDRITQKGHYSERQAAKLIKTIVEVLESCHALGVMDRDLKPENFLFDTVDEDAKLKPPFCYASPQNQQPNNGGEEEERRKRNRWRLDR. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08509 173 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08509 173 SMART serkin_6 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08509 173 Gene3D Transferase(Phosphotransferase) domain 1 85 142 - -
Seca3g08509 173 MobiDBLite consensus disorder prediction 157 173 - -
Seca3g08509 173 Pfam Protein kinase domain 3 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08509 173 FunFam Calcium-dependent protein kinase 1 1 84 - -
Seca3g08509 173 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 141 - -
Seca3g08509 173 MobiDBLite consensus disorder prediction 142 173 - -
Seca3g08509 173 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Seca3g08509 173 SUPERFAMILY Protein kinase-like (PK-like) 2 132 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08509 Seca-Chr3 216570001 216570522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08509 1 141 EF-hand Containing Proteins AT1G35670 73.759 5.51e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca3g08509 Pkinase 4.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08509 K13412 - gmx:100806678 251.521