Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08507 ATGTCGTGGCAAACTTACGTGGATGAACACCTCATGTGTGATATGGATGGCCACACCCTCACCTCCGCCGCCATCATCGGCCAAGACGGCACCGTCTGGGCTCAGAGCTCCAACTTCCCTCAGTTTAAGGGTGAAGAAATTGAAGCGATTATGAAAGATTTTGATGAACCGGGTAGCCTTGCCCCAACCGGCTTACACCTTGGTGGTACCAAGTACATGGTCATCCAAGGAGAATCTGGAGCTGTAATCCGCGGCAAGAAGGGTGCTGGCGGGATCACTGTTAAGAAAACGAATCAAGCTGTGGTTATTGGTATTTATGAGGAGCCTCTGACACCAGGACAGTGCAATATGATTGTTGAGAGGTTGGGAGATTATTTGATTGAGCAGGGGCTCTAG 396 0.5 MSWQTYVDEHLMCDMDGHTLTSAAIIGQDGTVWAQSSNFPQFKGEEIEAIMKDFDEPGSLAPTGLHLGGTKYMVIQGESGAVIRGKKGAGGITVKKTNQAVVIGIYEEPLTPGQCNMIVERLGDYLIEQGL. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08507 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Seca3g08507 131 FunFam Profilin 1 131 - -
Seca3g08507 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Seca3g08507 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Seca3g08507 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Seca3g08507 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Seca3g08507 131 CDD PROF 2 130 IPR005455 GO:0003779
Seca3g08507 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Seca3g08507 131 SMART prof_2 1 131 IPR005455 GO:0003779
Seca3g08507 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08507 Seca-Chr3 216561832 216562762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08507 1 131 Cytoskeleton Gene Families AT4G29340 78.358 2.35e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08507 K05759 - cit:102614190 243.432