Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08502 ATGGGGAAAGCTACCAGGTGGTTGAAGGGGTTGTTGGGAATGAAGAAAGAGAAGGACCACTGTGACAAATCAGGCCCATTGGCTCAGGGCAAGAAGGAGAAGAAAGGGTCAGGGAAGGATGCACAGAGTCACATTACTTTCAGAGCCTATGTTGCTGACAAAGAGGATGAACAGAACAAACACACAATTGCTGTGAGATCATTAAGCCATGGAAGAGGCACATTGTTTAGAGTAAGCAGGGAAAGGTGGGCTGCTCTAAAGATCCAAACTTTGTTCAGAGGCTATTTGGCACGAAAGGCTCTTAGAGCACTGAAAGCACTGGTTAAGATACAGGCTCTTGTTAGAGGGTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTCACAGTATGCAAGCTCTGATGAGAGCTCAATCCACTGTCCGGTCACAGAGAGCTCGTCGTTCCATCAACAAGGAGAATACATTTCCAAGAAAATATGTGGTAATTAAAAACTGGCAACTGTTTGATGAAACAAGAAATGAATTACAAAGTAAAGGGCTACCCACATCTTATGATACATCCTTGAATGGATTTGTTCAGAGCCCAAAAGTTGTTATGATTGACACTCAAAGTCACAGGACCTGTTCAAGATCAAGGTGCATTACCACTACAAATACAATGTCTGAATGTGGAGAAGATTTGCACTATCAAGCAATATCATCATCACCCTCTCTTCCTTATCAAGTTCCTGGTCGAATCTCAGTTCATGAATGCCAACATCCTCAAGATTTTGAATGGTACTTCAATGTTGATGAACGCAAATTCTCCACAGCTCACAACACACCTCGTTTAGCAAATTGTGGAGATACCTTCTTCCAGAATTACTCCAATTTTCCTGGTTACATGGCCAATACTCAATCATCTAAGGCAAAATTAAGATCTCATAGTGCTCCAAAACAAAGACCTGAGCCCAAGAAAAGGTTTCCACTCAATGAAATAATGGCCACTAGAAATAGCATAAGTGGTGTTAAAATGCAGTGGTCATCCAATTCTCAAACTAGAGATTACTGTTGTTTTGACAGGGTTATTTAG 1071 0.4146 MGKATRWLKGLLGMKKEKDHCDKSGPLAQGKKEKKGSGKDAQSHITFRAYVADKEDEQNKHTIAVRSLSHGRGTLFRVSRERWAALKIQTLFRGYLARKALRALKALVKIQALVRGYLVRKRVAATLHSMQALMRAQSTVRSQRARRSINKENTFPRKYVVIKNWQLFDETRNELQSKGLPTSYDTSLNGFVQSPKVVMIDTQSHRTCSRSRCITTTNTMSECGEDLHYQAISSSPSLPYQVPGRISVHECQHPQDFEWYFNVDERKFSTAHNTPRLANCGDTFFQNYSNFPGYMANTQSSKAKLRSHSAPKQRPEPKKRFPLNEIMATRNSISGVKMQWSSNSQTRDYCCFDRVI. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08502 356 SMART iq_5 80 102 IPR000048 GO:0005515
Seca3g08502 356 SMART iq_5 103 124 IPR000048 GO:0005515
Seca3g08502 356 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Seca3g08502 356 Pfam Protein of unknown function (DUF4005) 267 335 IPR025064 -
Seca3g08502 356 MobiDBLite consensus disorder prediction 15 41 - -
Seca3g08502 356 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
Seca3g08502 356 MobiDBLite consensus disorder prediction 300 320 - -
Seca3g08502 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 124 IPR027417 -
Seca3g08502 356 PANTHER IQ-DOMAIN 5-RELATED 1 329 - -
Seca3g08502 356 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
Seca3g08502 356 Pfam IQ calmodulin-binding motif 82 102 IPR000048 GO:0005515
Seca3g08502 356 Gene3D - 106 154 - -
Seca3g08502 356 Gene3D - 42 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08502 Seca-Chr3 216527433 216530138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08502 1 338 IQD Protein Family AT3G16490 43.003 6.29e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08502 - - gmx:100797686 411.379