Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08499 ATGATGGATGAAAGGTCAAGAAATGAGGTTTCTCATCAGCTGTTGGATTTGATTTCAAATGAGAAGAGAGAGTGGCACATTAACAAAGGTGAAGGAAAAGGAAAGTCTTCAGAGGAGAAGAAGCTTGAGCTGAGGCTTGGTCCACCTGGTGAGGACTGGTCTGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACCTCAAGCCTCATGCAAAACTGAGCTCCAACAATGGGTTCCAAACCAAGAATATTCCAAACTCTGACACCCCAGCTGGGGCTATGTTACCCTCTCCATGGCCCTCCACAGGGTACCACCAACAGGGTAATAATAAAGCTTCATCATTTCTTCAGTTCCCATCAACCCCACCTATGATGGGTAAGGATTCTGCATCACAAACCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGATAAGAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGCCTAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTTGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAACCTTACTAGCAGCACCTCTTCTAAGCCATCACCTCCTGAGTCTCAATCTCCTCAGCATAACAACAAGGTTGCTGGTAAAAAACCTATTGACAATTATGGTAAAGGTTTATTTGTTAAGATCAACATGGATGGAGTCCCAATTGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAATCTTTCTTCTGCAGTGGATGAGCTCTTTAGAGGCCTCCTTGCAGCTCAACGAGATTCCTCTGCTGGTGGAGTGAACAACAACCAAGAGGAAGAGAAACCAATTACAGGTTTATTGGATGGTAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAGTAA 924 0.4502 MMDERSRNEVSHQLLDLISNEKREWHINKGEGKGKSSEEKKLELRLGPPGEDWSERDESLLSLGYLKPHAKLSSNNGFQTKNIPNSDTPAGAMLPSPWPSTGYHQQGNNKASSFLQFPSTPPMMGKDSASQTCCPKVVELQNGDKKVFSPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLTSSTSSKPSPPESQSPQHNNKVAGKKPIDNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNNQEEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWQ. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08499 307 ProSiteProfiles PB1 domain profile. 217 307 IPR000270 GO:0005515
Seca3g08499 307 SUPERFAMILY CAD & PB1 domains 213 307 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 262 281 - -
Seca3g08499 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 306 IPR003311 GO:0005634|GO:0006355
Seca3g08499 307 MobiDBLite consensus disorder prediction 179 204 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 20 55 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 145 166 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 72 89 - -
Seca3g08499 307 Pfam AUX/IAA family 42 307 IPR033389 -
Seca3g08499 307 FunFam Auxin-responsive protein 212 307 - -
Seca3g08499 307 Gene3D - 212 307 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 99 127 - -
Seca3g08499 307 MobiDBLite consensus disorder prediction 71 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08499 Seca-Chr3 216471483 216475675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08499 221 306 B3 DNA Binding Superfamily AT4G23980 36.047 4.01e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca3g08499 AUX_IAA 8.3e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08499 K14484 - gmx:100799244 389.423