Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08498 ATGAATCTTGAGCCTCCTTTGAAGTTGTTACTACACTTTTATATCTTTCTGCTTCACCTTTACTGTTTCTGTTCTTATCCCACACCCATGAATTGCACTGACACAACCCGTGTTTGCACTTCCTTCATGGCCTTTAAGCCTCAACTAAACCAGTCCTTAGCTGTGATACAGAGCATGTTTGATGTGTTACCAAGTGACATCACTGTTGAAGGCAATGAATGGGATTACATATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGGATGAAGAAGTATGTATCTAACACCACATTCACTGTGAAATCCAATGAAGGGTTTGTGTATGACATGGTGATGGATGCCTATGATGGACTTGCTTTCTTGCCCAACACCACCCGTTGGGCAAGACAAGGTGCTGTCATACCATTGAGCTTGTTCTGTAGCTGTTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCCGAGATGGGGATAGTATTGAATCATTGGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATCAGCAATCCTGATACTGCCATTGTTGGTTCTCTATATTATGTACCTCTGAATTCAGTTCCTGGTGATCCTTATCACCTGAAGAATGATACTCCTCCAGTTCCTGTCCCTTCTCCATCTGTTGATAATTTTTCAGCTTATCAAATCAACAGTAAGGCTCATGTACCCTATGGATGGGTCATAGGAGGTCTAGGGGTTGGTCTTGCGCTAGTAATATTAAGCATGATTCTGTGTGTGTCCCTGAGATCATCCAACTGTTTTGTTGAAGATAGAAATCATGCAAAAGATGCTGAGGGCAAGATCTCTCATAAGTTCCATATTCTTGGGAGTGCAAGTTTGTGTTGTGGTTCTGGAAGATACATATGTGGCAAAAGCAAACACGTAAACCAGAAGCAAACTGATGGTGAATCCAGTAGTGATCAAACTACTGTTCCCAAAACTTCAACTCTAAGACCTGAGGTTTTTGACTTGGATAAGCCAGTAGTTTTTACATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTGCTTGGGCACAGAACATATGGTTCTGTTTTCTATGGTCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATAAAGGCTACTAAAACTAAAGAATTTATGTCAGAGATGAAAGTTCTGCACAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGTTATGCGGCTAGTCAAGATGAGCTTTTCCTTATTTATGAATATGCTCAAAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATCCATCACTTTCTTGGATCACAAGGGTCCAGATTGCGCTTGATGCTGCTAGAGGCCTTGAATACATACATGAGCATACAAAAACTCGTTATGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTTGGTAAAACAAATGAGGGAGAAACCACAACAACCAAAGTTGTTAGCACATATGGATACCTTGCTCCAGAATACTTGAGCAATCGCCTTGCAACGACTAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGAAGGCCATTATTCAAACACAAGGTCCTGAAAGACGATCACTAGCATCTATATTTGTCAAATTGCAGATGTTGGGAGTTCTTAGGAACGTACCAGATTCCATGAGCATGTCAGCCATGAGAGACCACATTGATCCTATTATGATGGGTCTGTATCCCCATGATTGTGTTTTCAAGGTGGCCATGCTGGCAAAGCAATGTGTAGATGAGGATCCCATTTTACGTCCTGATATGAAGCAAGTTGTGCTTTCCCTCTCACAGAACCTCATGTCTTCTGTTGAGTGGGAAGCGACTCTAGCGGGGAACAGCCAGGTATTTAGTGGCCTTATTCAGGGAAGATAG 1998 0.4124 MNLEPPLKLLLHFYIFLLHLYCFCSYPTPMNCTDTTRVCTSFMAFKPQLNQSLAVIQSMFDVLPSDITVEGNEWDYIFIRKNCSCAAGMKKYVSNTTFTVKSNEGFVYDMVMDAYDGLAFLPNTTRWARQGAVIPLSLFCSCSSGLWNYLMSYVIRDGDSIESLASRFGVSMDSIETVNGISNPDTAIVGSLYYVPLNSVPGDPYHLKNDTPPVPVPSPSVDNFSAYQINSKAHVPYGWVIGGLGVGLALVILSMILCVSLRSSNCFVEDRNHAKDAEGKISHKFHILGSASLCCGSGRYICGKSKHVNQKQTDGESSSDQTTVPKTSTLRPEVFDLDKPVVFTYEEIFSSTDGFSDSNLLGHRTYGSVFYGLLRDQEVAIKRIKATKTKEFMSEMKVLHKVHHANLVELIGYAASQDELFLIYEYAQKGSLSSHLHDPQNKGHPSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTTTKVVSTYGYLAPEYLSNRLATTKSDVYAFGVVLFEIISGKKAIIQTQGPERRSLASIFVKLQMLGVLRNVPDSMSMSAMRDHIDPIMMGLYPHDCVFKVAMLAKQCVDEDPILRPDMKQVVLSLSQNLMSSVEWEATLAGNSQVFSGLIQGR. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08498 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 29 659 IPR044812 GO:0019199|GO:0045087
Seca3g08498 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08498 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08498 665 Pfam LysM domain 153 190 IPR018392 -
Seca3g08498 665 Gene3D LysM domain 148 202 IPR036779 -
Seca3g08498 665 SUPERFAMILY LysM domain 151 196 IPR036779 -
Seca3g08498 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Seca3g08498 665 SUPERFAMILY Protein kinase-like (PK-like) 333 637 IPR011009 -
Seca3g08498 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Seca3g08498 665 ProSiteProfiles LysM domain profile. 151 195 IPR018392 -
Seca3g08498 665 Gene3D Phosphorylase Kinase; domain 1 327 426 - -
Seca3g08498 665 SMART LysM_2 152 196 IPR018392 -
Seca3g08498 665 Pfam Protein tyrosine and serine/threonine kinase 360 636 IPR001245 GO:0004672|GO:0006468
Seca3g08498 665 FunFam PTI1-like tyrosine-protein kinase 3 427 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08498 Seca-Chr3 216337182 216342568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08498 11 665 Receptor kinase-like Gene Family AT1G51940 62.874 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca3g08498 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08498 - - gmx:100796989 1024.23