Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08492 ATGCACACTTTCTATCTGTTTATTTTTTTTCTTCTCTATAATTTCTATATATCAATCACGTTGTTCTTCTCCCTCGAACCCTGTGATTGCTCCTTCGACCGAGTCACGCAGCGGAGAATCGGCATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGGCACAACTCCCGAACGTGCCCGTCGAGGAGTGGCGGCGGAGGCGGCGGCGCCGGAGTGAAGCTTTTCGGGGTGAGGCTCACGGATGGATCAATCATAAAGAAGAGCGCTAGCATGGGGAACCTAACCCTCTCCGCTCATCACCATTGTTCTCCTTCCTCCTTGGCGGCGTCATCGCCCAATCCAAGCTCCCCGTGCTCCGACCCGCCCCACGACCCTGACGGTTACTTGTCCGATGACCCGGCCCATGCCTCCACCTTCGTTAACCGCCGTGGAGAAAGAAAAAAAGGTGTTCCATGGACTGAAGATGAACATCGGCTGTTCTTGATTGGCCTCCAGAAGCTGGGCAAAGGAGACTGGCGCGGGATAGCACGTAATTTTGTTGTGACAAGGACTCCTACTCAAGTTGCAAGTCATGCCCAGAAGTACTTTATCCGGCAGAGTAATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGACATGGTTTCTTCAGATCCACCTTCGGTGCCAGAAGAACAATTACTACTTCCACCTTCTGAGAACTTGCAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTATCTCTCAAGTCAGAATTTGAACCCATGGATATTACTACTACTCAAGAAAATGTGGAAGAGCCGAGTGAAACTATGATGGGAATGGGATCAAATGGATTGACATCAATGGCTCCTGGATTCTTTCCAGCTTATTTACCTGCCCCATTTTCCATATGGCCATCAATGGCTGCTCCCTTTGAACAAGTTAACAGAGGAGAGACACCTCATCATCAGGTCCTGAAGCCAACCCCAGTGGTTCCCAAGGAACCTGTTAATGTTGATGAACTAGTGGGAATGTCTCATCTGAGCATTGGGGAAACAAAGGTGCTTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTATTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTAGTGGCTCGGATTTAAACAGTGGCAAGAACAGCGCCATTCAAGCGGTTTGA 1197 0.4929 MHTFYLFIFFLLYNFYISITLFFSLEPCDCSFDRVTQRRIGMTRRCSHCSNNGHNSRTCPSRSGGGGGGAGVKLFGVRLTDGSIIKKSASMGNLTLSAHHHCSPSSLAASSPNPSSPCSDPPHDPDGYLSDDPAHASTFVNRRGERKKGVPWTEDEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMVSSDPPSVPEEQLLLPPSENLQPCNGKSQPSLNLSLKSEFEPMDITTTQENVEEPSETMMGMGSNGLTSMAPGFFPAYLPAPFSIWPSMAAPFEQVNRGETPHHQVLKPTPVVPKEPVNVDELVGMSHLSIGETKVLDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNSAIQAV. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08492 398 MobiDBLite consensus disorder prediction 376 398 - -
Seca3g08492 398 Gene3D - 150 201 - -
Seca3g08492 398 ProSiteProfiles Myb-like domain profile. 144 196 IPR001005 -
Seca3g08492 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 200 IPR017930 -
Seca3g08492 398 SUPERFAMILY Homeodomain-like 146 201 IPR009057 -
Seca3g08492 398 NCBIfam myb-like DNA-binding domain, SHAQKYF class 147 199 IPR006447 GO:0003677
Seca3g08492 398 Pfam Myb-like DNA-binding domain 151 196 IPR001005 -
Seca3g08492 398 ProSiteProfiles SANT domain profile. 152 200 IPR017884 -
Seca3g08492 398 CDD SANT 151 196 IPR001005 -
Seca3g08492 398 FunFam transcription factor MYB1R1 150 201 - -
Seca3g08492 398 SMART sant 148 198 IPR001005 -
Seca3g08492 398 PANTHER TRANSCRIPTION FACTOR KUA1 44 331 - -
Seca3g08492 398 MobiDBLite consensus disorder prediction 105 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08492 Seca-Chr3 216202683 216207072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g08492 Myb_DNA-binding 2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08492 - - gmx:778036 528.48