Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08475 ATGTCAATGTCCTGCAAGGATGGTAAAGCGGGATTGGACAATGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTTATTCGAGAGTGCCCAATCCTCTCTAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGGCTGCAAGCTGTAAATAGGAAGCTGACAGCAATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTATGAAAATGGCTACTTTCGTCAACATACCCAAAATACTACGCTTGCAACCAAAGACACAAGCTGTGAATCAGCCGTTACTAGTGGTCAACGCAGTTTGACAACGCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCATGTGGCCTAGTGGGCCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATAGGCCTTCCTGGTATCGTGATTGCCGAGCTGTCGATGTTCTGAACGTGCTTCCCACCGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCGCCTGCTCGGGACTTCTGGTTGTTGCGATACACATCTGTTTTAGAAGATGGAAGCCTTGTGATCTGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCCGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCCAGTGGGTACCTGATAAGGCCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATGTGGATTTAGAGCCATGGACTGTTCCTGAAGTACTACGTCCACTGTATGAATCATCAACAGTGTTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCGACAGCTCTTCGAGCACTTGGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCATTGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAACCTTTCCTTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAGAACGTGCCTCCAGCCATTCTACTAAGGTTTCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTTCTCATTCTCCTGAAGACGCTATAATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGTACCTGTGCTGAACTTATATTCGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATAATTCCTCTTGATTCTGGAAAGGAAGCATCCAACCCAAATCGCACCCTTGACCTGGCATCTGCGCTTGATGTTGGCCCCGCTGGAAACAGAGCATCAAATGATTTTTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCCTTTGAAAGTCATATGCAAGACCATGTAGCATCCATGGCACGTCAATATGTTCGCAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCACTTTCACCTTCTCATTTAAGTTCACAAGCTGGGCTTAGGACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTCGCTGGATCTGCAACAGTTATAGGTTTGTATGCTCCTTTTCTTGCATTTGCCTTCACATTACTGATACTGAAGCTAGTGTAATGTATTTAGCCATGAATCTTATGGTACTGTTTGATATATCCTGCATGAATTTGAGATACTTTGTTACTTCCATTGAAGTTAATGATAGGTGCTACTTGGGTGTTGAGCTGCTTAAATCTAATAATGAGGGGAACGAGTCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTATGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCGCAAACCAGGCAGGACTTGATATGCTGGAGACTACACTAGTTGCTCTACAAGATATATCATTAGAGAAAATATTTGATGATCATGGCAGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGATAGTACTTCTATCACTGGATGAACTTGTTCCTTTCTCTTATTTCTCTTCTTTCTCCCTGAATTGGGGGGGTTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGCGACCTATCTCATATGAAAGAGTTGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGTTTTATGTTTATGAACTGGTCCTTTGTTTGA 2730 0.4487 MSMSCKDGKAGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWTVPEVLRPLYESSTVLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPTALRALGQRLSRGFNEALNGFTDEGWSLIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGISHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDVGPAGNRASNDFSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRFVCSFSCICLHITDTEASVMYLAMNLMVLFDISCMNLRYFVTSIEVNDRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDHGRKILCSEFPQIIQQIVLLSLDELVPFSYFSSFSLNWGGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV. 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08475 909 CDD bZIP 68 107 - -
Seca3g08475 909 Gene3D - 11 82 - -
Seca3g08475 909 ProSiteProfiles START domain profile. 150 351 IPR002913 GO:0008289
Seca3g08475 909 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Seca3g08475 909 Coils Coil 71 112 - -
Seca3g08475 909 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Seca3g08475 909 SUPERFAMILY Bet v1-like 159 369 - -
Seca3g08475 909 SMART HOX_1 13 79 IPR001356 GO:0003677
Seca3g08475 909 Pfam MEKHLA domain 862 908 IPR013978 -
Seca3g08475 909 Pfam MEKHLA domain 754 838 IPR013978 -
Seca3g08475 909 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Seca3g08475 909 SUPERFAMILY Homeodomain-like 15 79 IPR009057 -
Seca3g08475 909 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 752 909 IPR044830 GO:0003700
Seca3g08475 909 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Seca3g08475 909 CDD START_ArGLABRA2_like 154 369 - -
Seca3g08475 909 Gene3D - 194 372 IPR023393 -
Seca3g08475 909 MobiDBLite consensus disorder prediction 131 149 - -
Seca3g08475 909 Pfam START domain 160 368 IPR002913 GO:0008289
Seca3g08475 909 CDD homeodomain 16 76 IPR001356 GO:0003677
Seca3g08475 909 SMART START_1 159 369 IPR002913 GO:0008289
Seca3g08475 909 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08475 Seca-Chr3 215714715 215721973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08475 1 840 Homeobox Transcription Factor Family AT1G52150 81.376 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g08475 START 6.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08475 K09338 - zju:107428556 1568.9