Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08467 ATGAAAGAAACAAGCTGTAATGAAACTACTAGCAGTAACAGTAGCAACAATAGTAACTCCTTCATAGCTGCTTCAAATTCAAACTTTTCAAAAGCAGAGAAAACAGAGACCAAAAAACAGAGCAGGGCCAAGAGAAACAGAGAGTGCAGCAAGCACCCGGTTTACCATGGGGTCCGAATGCGCAACTGGGGCAAATGGGTGTCCGAAATTCGTGAGCCTCGCAAGAAATCACGCATCTGGCTGGGGACTTTTGCCACCCCTGAAATGGCAGCACGAGCCCACGATGTTGCAGCTTTGAGCATCAAGGGCCACTCTGCGATTCTCAACTTCCCAAAGATAGCTCACGTGCTTCCAAGACCCCAAACATTGACCCCACGTGACATCCAAGCTGCGGCTGCACAAGCCGCCGCCATGGTGGAATTCGACCCTCACCCATTACACTCACTTCCATCATCATTATCAGAAGAAGGGCCAGAGTCTTCAGGTTCAGAGCTGAGCGAGATTGTTGAATTGCCTAATATAGAAGAGAGATTCGAATCGGTGGACTCGAGAACTGAGTTCATATCGGTTGACTCGGTGGATAGTTGGGTGTACCCGCCATTGGGCAGTTTTTCTGACATGATGCTTGGAGTTGGAGAACAGAGTTTTGTTGTAGAGAGCTCTGAGTTTGGGATTCCAAATTGGGACAGAAGATGGTTGTGA 702 0.4829 MKETSCNETTSSNSSNNSNSFIAASNSNFSKAEKTETKKQSRAKRNRECSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSAILNFPKIAHVLPRPQTLTPRDIQAAAAQAAAMVEFDPHPLHSLPSSLSEEGPESSGSELSEIVELPNIEERFESVDSRTEFISVDSVDSWVYPPLGSFSDMMLGVGEQSFVVESSEFGIPNWDRRWL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08467 233 MobiDBLite consensus disorder prediction 1 53 - -
Seca3g08467 233 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Seca3g08467 233 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g08467 233 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Seca3g08467 233 MobiDBLite consensus disorder prediction 32 53 - -
Seca3g08467 233 Pfam AP2 domain 53 104 IPR001471 GO:0003700|GO:0006355
Seca3g08467 233 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Seca3g08467 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08467 Seca-Chr3 215539808 215540509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08467 25 200 AP2-EREBP Transcription Factor Family AT5G11590 53.684 4.03e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08467 AP2 8.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08467 K09286 - gmx:100787471 258.07