Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08453 ATGATGGCTGGGAACCCTAACTGGTGGAGCAATATGCATCCACCATCTTTGATCCCTCCCCAATATGTGATTGGATCTTCTTCAATTCCTTTTAATTCTTTGACAGAAAATCCAGAGCCTCCTCAATCATGGAGCCAACTTCTTTTCACTGGATTGCCTGGGGAAGAAGAGAGGCTTGGTTTCAGTCATTTTCAACTTAAAAACTCAGAAAACTGGGATGTCCAAATTCTTAATCCATCTTCCAGAGGTCCTATTCTGGATGTAATAAAGCAAGAAGTTTCTCAAAGTGGCAATCTGTATGGCCATGTGCATGAGGAATTTCAGTGTTCTGGACCTGCAGGGTCATCTTGGTCACATATGGTACCAGTTTCTTCCCCAAGGTCTTGTGTCACTAGCTTGAGTAGTACTAGTAATAATATATTGGATTTCACTTATAACAAGCCAGACCATAGGAAGAATCAACTACCAGATCAAACATCTGAGTGTAATAGCACATCCACTGTTGGAGTTTGCAAGAAGGCTAGGGTTCAGACATCTTCAAGCCAACCACCTCTGAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAACTAGTTTCCCCATTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATCAGGTTCCTGCAGGGTCAAATTGAGGCTCTCAGCACTCCTTACTTGGACAATGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGGTATGCTTTATTGGATCCATCAACTCATTAGAATCAAATTAA 834 0.4197 MMAGNPNWWSNMHPPSLIPPQYVIGSSSIPFNSLTENPEPPQSWSQLLFTGLPGEEERLGFSHFQLKNSENWDVQILNPSSRGPILDVIKQEVSQSGNLYGHVHEEFQCSGPAGSSWSHMVPVSSPRSCVTSLSSTSNNILDFTYNKPDHRKNQLPDQTSECNSTSTVGVCKKARVQTSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSTPYLDNASKNMRNQQSVHGERNSVFPEDPGQVCFIGSINSLESN. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08453 277 FunFam Transcription factor bHLH123 family 186 249 - -
Seca3g08453 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 237 IPR036638 GO:0046983
Seca3g08453 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Seca3g08453 277 Gene3D - 186 251 IPR036638 GO:0046983
Seca3g08453 277 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 245 - -
Seca3g08453 277 CDD bHLH_AtbHLH_like 186 233 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08453 Seca-Chr3 215288126 215291156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08453 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.437 7.39e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08453 - - gmx:100802121 409.838