Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08446 ATGCCAACTGAAGAACAACAACTACGAATTGAAAATGCCAAACTCAAAGCAGAGGTAGAGAAGCTTCGAGCAGCTTTAGGGAAATATGCACCAGGGACAACATCCCCTTCATGTTCTGCTGGTCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGACAAGTCAAGGATAATGGACATAGTGAACCAAGCAATGGAAGAGCTCATAAAAATGGCTACTGTTGGGGAACCATTATGGCTCCGTAGCTTTGAAACTGGTCGTGAAATACTCAACTACGATGAATATTTGAAGGAATTCGCAGTTGAAAATCCAAATAGTTCAACCCCAAAGAGATCCATCGAAGCATCAAGAGACACAGGGGTTGTTTTTATAGACCTTCCTAGACTTATCCAGAGTTTTCTAGATGCTAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCTGCAACCGTTGACGTTATATGCAATGGAGAAGGTTCTAACAAGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACACCAATGGTGCCCACAAGGGAAGTCTATTTTGTCCGATACTGCAAACAGTTGAGTGCTGAACAATGGGCAATCGTTGATGTATCCATAGATAAAGTAGAAGACAACATTGACGCCTCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTGTTGAGGACAAGTCAAATGGCCATTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGCGCGGTGCATACGATGTATCGCACTATTGTCAACAGTGGACTGGCCTTTGGGGCAAGGCATTGGATTGCGACACTGCAACTTCAATGCGAACGTCTAGTTTTTTTCATGGCAACAAATGTACCAATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGCAATTGGCACAAAGAATGACATGGGGTTTCTGCCATGCAATTGGGGCGTCAAGCTTCCACACATGGACTAAGGTTACGAGTAAAACAGGGGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAATGATCCTGGTGAACCTCTTGGGTTGATATTGTGTGCTGTTTCTTCTGTGTGGTTGCCTGTCTCTCCAAATGTTCTATTTGATTTCTTGAGGGATGAAGCTCGCCGAACTGAGTGGGATATCATGTGCAGTGGTGCTTCAGTGCAGTCCATTGCAAATCTAGCCAAAGGACAAGACCGTGGCAATGCAGTAACCATCCAAACAATTAAAACGAAAGAAAACAATATGTGGATATTGCAAGATTGCTGCACGAATTCTTATGAGTCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAATCTGTGATGACTGGATGTGATTCAAGCAATCTTGCTATATTGCCCTCTGGATTCTCAATTGTCCCTGATGGCCTAGAGTCAAGGCCATTGGTGATTACAACAAGAAAGGAAGAAAAAAACACAGAGGGAGGGTCTTTATTTACAATAGCATTCCAAATCCTTACCAATGCCTCTCCTACAGCCAAGTTAACATTGGAGTCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAACATCAGAACGAGTTTACAATGTGAAGATGGTTAG 1656 0.4287 MPTEEQQLRIENAKLKAEVEKLRAALGKYAPGTTSPSCSAGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATVGEPLWLRSFETGREILNYDEYLKEFAVENPNSSTPKRSIEASRDTGVVFIDLPRLIQSFLDANQWKEMFPCLISKAATVDVICNGEGSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIVEDKSNGHCKVIWVEHLECQKSAVHTMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILQLAQRMTWGFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDEARRTEWDIMCSGASVQSIANLAKGQDRGNAVTIQTIKTKENNMWILQDCCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPLVITTRKEEKNTEGGSLFTIAFQILTNASPTAKLTLESVDSVNTLVSCTLRNIRTSLQCEDG. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08446 551 Coils Coil 5 25 - -
Seca3g08446 551 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 546 IPR042160 -
Seca3g08446 551 SUPERFAMILY Bet v1-like 320 531 - -
Seca3g08446 551 ProSiteProfiles START domain profile. 57 293 IPR002913 GO:0008289
Seca3g08446 551 SUPERFAMILY Bet v1-like 59 290 - -
Seca3g08446 551 Gene3D - 117 285 IPR023393 -
Seca3g08446 551 SMART START_1 66 290 IPR002913 GO:0008289
Seca3g08446 551 Pfam START domain 68 290 IPR002913 GO:0008289
Seca3g08446 551 FunFam Homeobox-leucine zipper protein GLABRA 2 66 289 - -
Seca3g08446 551 CDD START_ArGLABRA2_like 61 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08446 Seca-Chr3 214860111 214866525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08446 8 550 Homeobox Transcription Factor Family AT1G79840 66.179 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08446 K09338 - gmx:100808292 1027.31