Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08441 ATGGCAGCATCTGAAGGCTCTAGCATCTCTGCCACTTCACAGGGCATTTCCCACAAAAATGGTGATGAAGATAGCAACGTGGCCAAAATGAAGGAGAAGGGTGGAAAAAATGAACAAGATAAGGCCTCAAACTCTAATTCCCACAAGCATTTTGATTTTGTGCAACTCTCAAAAGATGATTCTGTTTGTGGATCTAAGGTGCAAGAACTAGATTTTTTCAACAGTGCAGGGAAAAATGTGGTGGGTTCATCATCTTGTGGGGCTAACAACAACAACAATGATCAAGGGAGAGAGGAGAACACTGAGGAAAAATCCTCAGAGTCAAAGACTTTCACATGCAACTTTTGCAAGAGAAAATTCTCTTCTTCACAGGCCTTAGGAGGACACCAAAATGCTCACAAGCCAGAGCGTGCACTTGCAAAGCATCGCCAAGAGATGCAAAATGCTGGTGCTTTAGGCCACCCTCATCACTTTTCCTATTACACTTATCCTAGTCTTTCTACATCACCTTATTATGCATCTTATAATAAATCACTTGGGATCAGAATGGATTCCATGATTCATAAGCCAAACTATCTGCATACCCCACCTGGCTTTAGGTATGGTCATGCTGGTGCTTGGCCATCAATGCAAGAGATGCTAAACTTTTCTTCTGTTGATAGATTGAGAATGGAGGGTTTCAATTCAAATAGTGGAAATGCAACTTTGAAAATAGAAGATCATGGTGGTAGTACTGTTCCATCTATTCTCCAATTTGGGGATTCTTCTGCAAATGCTGCTACAAGGTCAAACTCAAACATAGACAAGTCAACTCAGCCTACCACTGGTGATCATCATTCCAATATTAACATTGAAGAACCCTCCAATTCTGAATCTTCTGGACTTGATTTGTCACTCAAGCTTTAA 906 0.4095 MAASEGSSISATSQGISHKNGDEDSNVAKMKEKGGKNEQDKASNSNSHKHFDFVQLSKDDSVCGSKVQELDFFNSAGKNVVGSSSCGANNNNNDQGREENTEEKSSESKTFTCNFCKRKFSSSQALGGHQNAHKPERALAKHRQEMQNAGALGHPHHFSYYTYPSLSTSPYYASYNKSLGIRMDSMIHKPNYLHTPPGFRYGHAGAWPSMQEMLNFSSVDRLRMEGFNSNSGNATLKIEDHGGSTVPSILQFGDSSANAATRSNSNIDKSTQPTTGDHHSNINIEEPSNSESSGLDLSLKL. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08441 301 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g08441 301 Gene3D Classic Zinc Finger 91 153 - -
Seca3g08441 301 MobiDBLite consensus disorder prediction 22 51 - -
Seca3g08441 301 MobiDBLite consensus disorder prediction 257 301 - -
Seca3g08441 301 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 301 IPR044246 GO:0009788
Seca3g08441 301 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Seca3g08441 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Seca3g08441 301 MobiDBLite consensus disorder prediction 83 107 - -
Seca3g08441 301 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Seca3g08441 301 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08441 Seca-Chr3 214816966 214817871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08441 105 190 C2H2 Transcription Factor Family AT5G10970 52.874 1.76e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g08441 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08441 - - lja:Lj1g3v2534910.1 279.256