Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08436 ATGGAGATTGAAGCTGACTCAAGAGATGGCTCTCTCATTCTGATCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTAGGAAGGAGGTCTGTTATCAAGGAGCGCTTCTCAAAGAAGTACAGGCATCCAATTTTGGATTCTAAATTGACACTCAAGCGCTTAAATGCGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCCCTTCAGTCAAGGATGTATTTCTTGACTTCGGGTCAAATGGTGTCATTGAAGAACGGATGGACAGCATTGCATCCCAAATTGGTGATGCAATTGGAAAATTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTGAAGAATGATACCAATCAGTTGGTTCTTATTGACTTTGGTTTGAGCTTCACCTCGACTCTACCGGAAGATAAAGCTGTCGATTTGTATGTCCTGGAAAGAGCCATTCTTTCAATGCATTCTTCATGTGGGAATGTGATGGATAAGATACTTGCTGCATACCGCAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCGCAAGTGCGACAAAGAGGACGAAAGAGGACCATGGTTGGATGA 681 0.4332 MEIEADSRDGSLILIKQGAEARVFESSFVGRRSVIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDPVLHTLTFEYVEGPSVKDVFLDFGSNGVIEERMDSIASQIGDAIGKLHDGGLIHGDLTTSNMLLKNDTNQLVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVMDKILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08436 226 Pfam Protein kinase domain 50 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08436 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08436 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Seca3g08436 226 FunFam Protein kinase superfamily protein 107 223 - -
Seca3g08436 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Seca3g08436 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08436 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Seca3g08436 226 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Seca3g08436 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Seca3g08436 226 Gene3D Transferase(Phosphotransferase) domain 1 106 223 - -
Seca3g08436 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 226 IPR022495 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08436 Seca-Chr3 214783110 214785521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08436 2 160 MAP Kinase Kinase Kinase AT5G66710 28.834 1.07e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca3g08436 Pkinase 2.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08436 K08851 - csin:114273394 413.69