Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08424 ATGGGTAAGGGAACGGGGAGCTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTGAGGTGTGGCCGTCGCAGCTTCCACCTCCAGAAGAGTCGCTGCGCCGCATGCGCTTTCCCTGCAGCCCGCAAGAGGAAATATAACTGGAGCGTTAAGGCAATCCGCAGAAAGACCACCGGAACTGGTAGGATGAGGTACTTGCGTCACGTGCCTCGCCGATTCAAGAGCGGCTTCAGAGAGGGAACTGAAGCTGCACCTAGGAAGAAGGGAGCAGCTGCCTCTGCTTAA 288 0.566 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAASA. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08424 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Seca3g08424 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Seca3g08424 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Seca3g08424 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Seca3g08424 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 94 - -
Seca3g08424 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Seca3g08424 95 FunFam Ribosomal protein L37 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08424 Seca-Chr3 214648276 214649362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08424 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.368 4.89e-58 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08424 K02922 - csv:101221537 178.718