Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08419 ATGTTTATTTTCGATTTCGTGAGTTTCGTCTTCGATCAATTGGTAGAAGTCAGTGAAGCATTTTTCATTTCCTTAAATTGCTGGTTCGTCTCTGCTTCGTCACAATCAGATCAATTTGTTGAGTTGCGACCAGCATCGAAGTTTCTGTTCGCTGCAGGTTGTATCAGTCCACCAAAGATGGATAATCTGTATGAAGTTCCAATATATAATTTGGATGATGACAAAGATATGGGCAACGGTGTTGCTTCTAATGATAGTGTTAGTGGAGATTGTACTAATAGGGTTGAAGAAAATGATAGTGGTAATAGAGAACCTAGTAATGTTGGAGATACCCATAATAATGATGAAAGAAATGAGGCACCAATGGTTGATGTTGGAGGTGATTTGTTTAAAAGGATAACAGAATTGACTAGTGATGATATACTAGGATTAGAGTTCGGATCTCAAAAGGAAGCATATGAATTTTACAATCAATATGCTAAAGCTCACGGTTTTGTGATAAGGAAAGATGAGATAAAAAGGGATGTTAAGGGTAACATTGTAATGCGGCAGTTTGTATGCAACAGAGAAGGATTGAGGAACAAAAGGCATTTGATGAGGTTGGATCGAAAAAGGGATCATAGAGCAATCACTCGCACTAATTGTGAAGCTAAATTACGAATTCGCTTCAATCGAAAGAAAACAAATTGGAGAGTGGTGTCGTTTGAGGAGTCTCATAACCATGAGCTAACCCCACCTAGGTTTGTGCATTTACATTCTGCATATCGTAAGTTGACAGAGGGAGATAAGGCTCAAGTGGATAGCTTACATTCTCATGGTGTGAGAACGTGTCACATTATGGGTTACATGTTGGCTCAAAAAGGGGGGTACAGTAATGACAAAAATGAAATGGAATTTGATGTATCTAACACTCAAGTACCTGTACCTTCAGAAAATTCCAGTGGGAGAAACATTAAAAAAGGGAAGGAGAAGGTAGATCCTGTTAGTACCAGTAAGGTGAAAAAGGTGAAGGGGAAAAAGGAAAAAGACTCAAGTCAAAAACAGGCAAATGAAGTTAAAATTGAATCAATGAGTTATTATAATGGAGGAGGAATGCCTAATATTCATCAAGCTGGTTGTTCTACTGGAGTAATGCCTAATTTTCCGCAAATGAGATTTCCCTCATATGGTTATGGCCCAATGAATCATGGGGTTTCCATGATGCCTCATTATGATGGAGGTCACTGTTACCCTCAAACTGGTGGAGTTCCATTATACCCTCAACATCATCAGTTTTTTAGTCAAATCCCAAGTGTACATAATGGGTCATCATGGCATGATTTGCTTCAACATGTATCCCAAAATAGGGGTGACTGCAACTCTAACAATTTGAGACTTAATCCTGGTGGGGGGGCCTGA 1398 0.387 MFIFDFVSFVFDQLVEVSEAFFISLNCWFVSASSQSDQFVELRPASKFLFAAGCISPPKMDNLYEVPIYNLDDDKDMGNGVASNDSVSGDCTNRVEENDSGNREPSNVGDTHNNDERNEAPMVDVGGDLFKRITELTSDDILGLEFGSQKEAYEFYNQYAKAHGFVIRKDEIKRDVKGNIVMRQFVCNREGLRNKRHLMRLDRKRDHRAITRTNCEAKLRIRFNRKKTNWRVVSFEESHNHELTPPRFVHLHSAYRKLTEGDKAQVDSLHSHGVRTCHIMGYMLAQKGGYSNDKNEMEFDVSNTQVPVPSENSSGRNIKKGKEKVDPVSTSKVKKVKGKKEKDSSQKQANEVKIESMSYYNGGGMPNIHQAGCSTGVMPNFPQMRFPSYGYGPMNHGVSMMPHYDGGHCYPQTGGVPLYPQHHQFFSQIPSVHNGSSWHDLLQHVSQNRGDCNSNNLRLNPGGGA. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08419 465 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 82 301 - -
Seca3g08419 465 MobiDBLite consensus disorder prediction 82 122 - -
Seca3g08419 465 Pfam FAR1 DNA-binding domain 154 244 IPR004330 -
Seca3g08419 465 MobiDBLite consensus disorder prediction 316 349 - -
Seca3g08419 465 MobiDBLite consensus disorder prediction 96 122 - -
Seca3g08419 465 MobiDBLite consensus disorder prediction 302 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08419 Seca-Chr3 214567090 214571615 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g08419 FAR1 3.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08419 - - ccaj:109792835 259.996