Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08418 ATGGACTTCTGGGCTGATTTTGTTGTGAGCAGTGCTGGAAGAGAGTTTATAGCAGGAGGCTTTGGAGGCACAGCTGGTATAATCTCCAGTTACCCGTTGGACACCCTCCGCGTGATACAACAACAATACAGCAGAAACTCTGCCATTAGCATCCTTAGAAATGTGTTGACCAAGGAAGGACCAGTAGCTCTGTACCGTGGCATGAGTGTGCCTTTGGCCTCTGTTGTTTTTCAGAATGCTATGGTTTTCCAAAGTTATACAATTTTCACACGGGCATTTAGCTCATCTCTTTCGGTTAATGGCCCTCCTTCCCTCAAGGATGTTGCTTTAGGAGGACTTGGTGCCGGTGCTCTCCAAAGCCTATTGATCACCCCTGTTGAGTTGGTTAAAATTCGTCGTCAGTTGCAAAACAGCATAGGCCAATTGGCAGAAACCAGAAAGGGACCTCTTGACATTGCAAAGAACATTTGGAAAAATGAGGGCACTCGTGGCATTTATCGAGGACTTGGCATCACTATGCTTAGAGATGCACCTGCACATGGCTTCTACTTTTGCACATATGAATACACGAAGGAAAAGCTTCACCCTGGTTGTAGAGAAAGCAGTGAAGAAAGCATGAGTGCTATGTTTATAGCAGGAGGATTAGCCGGGATAGCGAGCTGGATTTTCAACTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAGACACCTTCTTCAATGAAATACAAAGGTATTTTGGATTGTGTCCTTAAGATCATTAAAGAAGAAGGATACATTGTGCTATGGAGGGGTTTGGGAGCTACCATTGTTAGAGCATTTGTCATGAATAGTGCTATATTTCCTGCTTATGAGATCTCTCTTAGGTGTCTCAAAGAACTGAAGCATTCAAATGCATGA 903 0.4385 MDFWADFVVSSAGREFIAGGFGGTAGIISSYPLDTLRVIQQQYSRNSAISILRNVLTKEGPVALYRGMSVPLASVVFQNAMVFQSYTIFTRAFSSSLSVNGPPSLKDVALGGLGAGALQSLLITPVELVKIRRQLQNSIGQLAETRKGPLDIAKNIWKNEGTRGIYRGLGITMLRDAPAHGFYFCTYEYTKEKLHPGCRESSEESMSAMFIAGGLAGIASWIFNYPTDVIKTRLQAQTPSSMKYKGILDCVLKIIKEEGYIVLWRGLGATIVRAFVMNSAIFPAYEISLRCLKELKHSNA. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08418 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Seca3g08418 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Seca3g08418 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 193 IPR018108 -
Seca3g08418 300 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Seca3g08418 300 Pfam Mitochondrial carrier protein 204 293 IPR018108 -
Seca3g08418 300 Pfam Mitochondrial carrier protein 11 94 IPR018108 -
Seca3g08418 300 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Seca3g08418 300 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Seca3g08418 300 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Seca3g08418 300 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Seca3g08418 300 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Seca3g08418 300 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Seca3g08418 300 Gene3D Mitochondrial carrier domain 13 299 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08418 Seca-Chr3 214553878 214558531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08418 1 292 Antiporters AT1G79900 61.092 1.05e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08418 K15109 - gmx:100801221 409.453