Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08417 ATGGACTTTTCGGCAGAATTTGTTGCAAGCAGTGCGGGTAGAGAGTTTGTAGCTGGATGCTTTGGAGGCACAGCTGGTATCATCTCCAGTTACCCATTGGACACCCTCCGAATTATGCAACAGCAATCCAACAAAAGCTCTGCTGTCACCATCCTTAAAAATGTGTTGTCTAGGGAAGGACCAGCAGCTCTGTACCGTGGGATGGGTGTGCCATTGGCCTCTGTTACTTTTCAGAATGCTATGGTTTTTCAGAGTTATGCAATTTTCACAAGGGCATTTAGCCCGTCCATTTCTCCTGACGGCCCTCCTTCCCTCAAGTATGTTGCTTTAGGAGGGCTTGGTGCCGGTGCTCTCCAAAGCCTATTGGTCTCCCCTGTTGAGTTGATTAAAATTCGTCGTCAATTACAGAACAGTTCAAACCAATTGACAGAAACCAAAAAGGGTCCTCTCGAGATTGCTCACAACATTTGGAAAAGGGAAGGCATTCGTGGCATTTATCGAGGACTTGGCATCACTATGCTCAGAGATGCACCTGCCCATGGCTTCTATTTCTGGACATATGAGTACACAAGGGAAAAACTTCACCCTGGCTGCAGAGAAAATTGTCAAGAAAGCATGAATACTATGTTTATAGCAGGAGGATTAGCTGGGATAGCGAGTTGGATTTTTAACTACCCTACAGATGTTATGAAGACAAGATTGCAGGCTCAAACACCTTCTTCAATGAAATACAAAGGTATTTTGGATTGTGTCCTTAAGATCATTAAAGAAGAAGGATCCTTTGGGCTATGGCGGGGTTTTGGAGCTACCCTTGTTAGAGCATTTGTCATGAACAGTGCTATATTTCCTGCTTATGAGATCTCCCTAAGGTGTCTATTTAATAATTGA 888 0.4403 MDFSAEFVASSAGREFVAGCFGGTAGIISSYPLDTLRIMQQQSNKSSAVTILKNVLSREGPAALYRGMGVPLASVTFQNAMVFQSYAIFTRAFSPSISPDGPPSLKYVALGGLGAGALQSLLVSPVELIKIRRQLQNSSNQLTETKKGPLEIAHNIWKREGIRGIYRGLGITMLRDAPAHGFYFWTYEYTREKLHPGCRENCQESMNTMFIAGGLAGIASWIFNYPTDVMKTRLQAQTPSSMKYKGILDCVLKIIKEEGSFGLWRGFGATLVRAFVMNSAIFPAYEISLRCLFNN. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08417 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Seca3g08417 295 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Seca3g08417 295 Gene3D Mitochondrial carrier domain 8 294 IPR023395 -
Seca3g08417 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Seca3g08417 295 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Seca3g08417 295 Pfam Mitochondrial carrier protein 11 93 IPR018108 -
Seca3g08417 295 Pfam Mitochondrial carrier protein 208 294 IPR018108 -
Seca3g08417 295 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Seca3g08417 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 193 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08417 Seca-Chr3 214520649 214522861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08417 1 295 Antiporters AT1G79900 62.838 1.16e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08417 K15109 - gmx:100812034 424.091