Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08415 ATGGGAACATTGCATGTAGGAAGAAGCATAGGGAGTGTCCTTCTCATCCTCACTTTGACATTCACATCAAACTTCACAAGGCTTCAGTGTTTCAGCCCTGGTGATGACACACTAATGCAAGGAGATTCCTTTGAAGTGGGAAGACTAACCTCAGCTTCTGAGGTCTACAGACTAAGTTTCTTCACTGTGAAAGGCAATGAAAGTGGGAGATTGTACTTAGGAATAAATTATAACAGAGGTGGTTGTGTCTGGCTTGCCAACCAAAACATCCCACTTTATAAGCGACAAGCAAAGCTTGTAATTGATGATTATGGTAGCTTGAAAGTATACAATAATGAGACAGAGGCTATAGTGTTATACTCAAGCAAAGCTGCCCAAAAGATCAATGCTAGTGCCACTTTGCTCAATACAGGAAACTTTGTACTGAGCCAAATGAACACAGATGGTACTGTAAACACTCTCTGGCAAAGTTTTGATCACCCCAATTACATGTTATTGCCAGGAATGAGACTAGGATTCAACAGGGTAACAGGGCAGAATTGGACACTAACATCATGGACAGGCTCAAACACACCTGCTCCAGGTTCCTTCACTCTTGGCGTGGACCCAAACAACAAAGAGCAATTGGTTATAAGGTGGAAAGACAGAATCTACTGGACTAGTGGACCACTCATTGATGGAAGTTTTAGCAATTTGAACACAACCTCAGGGAGATATGACATAAATTTTACCTATTTTTCAAATGAAAATGAAACATATTTCAGTTATAATTCCACATCACCCTCGGGTGAGATTGTTTTCATTGGTTTGAATCCACTTGGTCAATTATATGGCAAAGCTTCTGTCTCTTGCAACAGTGACAACCCTTCACATGTTAGTGGATGTGTGGCTCAAAGGTTCACAACCTGCAGGAACCAAGATACTTATGTGTCCATGACCAACTTTAAGTACGGTAATATGTCCCAAGAAGGGTACAAGAATGAGGAATTGGAAAAGCTTTCCCTTTATGATTGTGGGGTGAAGTGCTTGAATAGTTGCTCTTGTTTTGCCTACTCTTCCACAACCGAAGATAACACTGGCTGCCAGATGTGGGATAGAGGAGCCAAATTTGCCACATCTTCTAGTGGGAGACCAGTTTACTTCATCTCTGAAAATATCATTAAGAATGGCACTTCCGTACATGGAAATTCTAAAGCAAATAAGAGAAAGTTATGGATAGCAAGTGTGATTGGGGGAACTATACTGATACTTGTGTCATCCTTTGGGCTCTATCTATTGTGGAGGAAACGAAGAATAGAAGAAGAAAAATTGAAGCAGAGGAAGATATTATATGAGATTGAAGGAACTGCAACGCCTTCCCTTGTAAACGGCAAACACAGAAGAAAAAATAAAATTGAAACAATGAACCATGGGTTGCACATGTTCAGCTTTGAAAGCATTGAATTGGCAACTGATAATTTCTCTTCATCACATAAGTTGGGTGAGGGTGGATTTGGACCTGTTTATAAGGGACAATTACTTGATGGGAGAGAAATAGCAATAAAGAGACTTTCTACAAGCTCAAGGCAAGGGTTAACAGAGTTCAAGAATGAGGTTAAATTAATTGCCAAATTCCAACACACTAACTTGGTCAAGCTTCATGGTTTTTGCATTGAAAGAGAAGAAAGGATGTTGATCTATGAATATATGCCCAACAAAAGTTTGGACTTTTATCTTTTTGATTCCAACAATAAGATTTTGCTGGATTGGAATAAACGATTTGGCATTATCCAAGGAATAGCACAAGGGCTTGTTTATCTTCATACATATTCAAGACTGACAGTAATTCACAGGGACTTAAAACCGAGTAATATTTTACTTGATTATGAAATGAATCCAAAGATATCTGATTTTGGTTTGGCAAAAATATTTGGGTTGAAAGAACCCCAACAAAACACAAATAGGGTTGTTGGAACTTATGGTTATATGGCTCCTGAGTATGCTTTAAATGGCAGAGTCTCAACCAAAATTGACGTTTTTAGTTTTGGAGTATTGATGCTTGAGATTGTGAGTGGAAAAAAGAATGCTAGTAATTATGATTCGGATTATCCCCTCAATCTCATAGGACATGCTTGGCAATTATGGAATAAGGGTACAGCTTTAGAATTAATAGACCCTATATTGAAGGGATCATGTGCTGTCAATCAAGTGTTGAGAAGCATTCATATTAGCCTTTTGTGTGTGCAAGATCAAGCTAAAGATAGACCAACTATGTCGGATGTGGTATCTTTCCTATCAAGCGAGGCTATTCTTTTAGCTGAACCGAAACAACCAGCTTTCTTCACTGATAATGGAAAATCTCCACTGTCTTCTATTAATCTTTGTGCTAACATTTATTCATGTTTCCATCTGTGCAGTGGTTATATGGCTCCAGAGTATGCAATAAATGGTATTGTGTCTATCAAAATAGATGTATTTAGCTTTGGTGTATTGCTATTAGAGATTCTCAGTGGCAAGAAGAATAATAGTCGCTATCATTCAGATCGCCCACTCAGCCTCATAGGATTTGCATGGCAGCTCTGGAATGAAGGTAAACCTCTTGAGCTAGTAGACCCATCATTAAGTGAATTAAGTTCTCAGAATGAAGTTTTGAGATGTATTCATATTGGCCTCTTGTGTGTACAAGATCAAGCAAATGATAGGCCTACCATGTTAGATATTGTTTCTTTTTTATCAAATGATACTATCCAACTTCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTATAGAGGAGTCAGAGCTTCCTTACAGCAGGCAAGAACATCATTCCTTAAATAGTGTAACAATTTCTAATATGTCTGGAAGATAA 2856 0.3848 MGTLHVGRSIGSVLLILTLTFTSNFTRLQCFSPGDDTLMQGDSFEVGRLTSASEVYRLSFFTVKGNESGRLYLGINYNRGGCVWLANQNIPLYKRQAKLVIDDYGSLKVYNNETEAIVLYSSKAAQKINASATLLNTGNFVLSQMNTDGTVNTLWQSFDHPNYMLLPGMRLGFNRVTGQNWTLTSWTGSNTPAPGSFTLGVDPNNKEQLVIRWKDRIYWTSGPLIDGSFSNLNTTSGRYDINFTYFSNENETYFSYNSTSPSGEIVFIGLNPLGQLYGKASVSCNSDNPSHVSGCVAQRFTTCRNQDTYVSMTNFKYGNMSQEGYKNEELEKLSLYDCGVKCLNSCSCFAYSSTTEDNTGCQMWDRGAKFATSSSGRPVYFISENIIKNGTSVHGNSKANKRKLWIASVIGGTILILVSSFGLYLLWRKRRIEEEKLKQRKILYEIEGTATPSLVNGKHRRKNKIETMNHGLHMFSFESIELATDNFSSSHKLGEGGFGPVYKGQLLDGREIAIKRLSTSSRQGLTEFKNEVKLIAKFQHTNLVKLHGFCIEREERMLIYEYMPNKSLDFYLFDSNNKILLDWNKRFGIIQGIAQGLVYLHTYSRLTVIHRDLKPSNILLDYEMNPKISDFGLAKIFGLKEPQQNTNRVVGTYGYMAPEYALNGRVSTKIDVFSFGVLMLEIVSGKKNASNYDSDYPLNLIGHAWQLWNKGTALELIDPILKGSCAVNQVLRSIHISLLCVQDQAKDRPTMSDVVSFLSSEAILLAEPKQPAFFTDNGKSPLSSINLCANIYSCFHLCSGYMAPEYAINGIVSIKIDVFSFGVLLLEILSGKKNNSRYHSDRPLSLIGFAWQLWNEGKPLELVDPSLSELSSQNEVLRCIHIGLLCVQDQANDRPTMLDIVSFLSNDTIQLPQPKQPAFFINVVIEESELPYSRQEHHSLNSVTISNMSGR. 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08415 951 CDD STKc_IRAK 493 758 - -
Seca3g08415 951 ProSiteProfiles Bulb-type lectin domain profile. 35 155 IPR001480 -
Seca3g08415 951 SUPERFAMILY Protein kinase-like (PK-like) 470 775 IPR011009 -
Seca3g08415 951 SMART serkin_6 487 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08415 951 Gene3D Phosphorylase Kinase; domain 1 450 562 - -
Seca3g08415 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 789 909 - -
Seca3g08415 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 766 - -
Seca3g08415 951 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 190 IPR036426 -
Seca3g08415 951 Pfam Protein tyrosine and serine/threonine kinase 798 904 IPR001245 GO:0004672|GO:0006468
Seca3g08415 951 Pfam Protein kinase domain 488 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08415 951 Pfam PAN-like domain 303 366 IPR003609 -
Seca3g08415 951 Gene3D Transferase(Phosphotransferase) domain 1 563 769 - -
Seca3g08415 951 Gene3D Transferase(Phosphotransferase) domain 1 774 915 - -
Seca3g08415 951 SMART blect_4 35 161 IPR001480 -
Seca3g08415 951 ProSiteProfiles Protein kinase domain profile. 487 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08415 951 SUPERFAMILY Protein kinase-like (PK-like) 778 937 IPR011009 -
Seca3g08415 951 Pfam D-mannose binding lectin 82 186 IPR001480 -
Seca3g08415 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 453 562 - -
Seca3g08415 951 ProSiteProfiles PAN/Apple domain profile. 303 385 IPR003609 -
Seca3g08415 951 Pfam Domain of unknown function (DUF3403) 906 951 IPR021820 GO:0004674
Seca3g08415 951 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 783 - -
Seca3g08415 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Seca3g08415 951 Gene3D - 32 158 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08415 Seca-Chr3 214493615 214504911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08415 800 919 Receptor kinase-like Gene Family AT4G23230 54.167 2.02e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08415 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08415 - - fve:101309951 719.153