Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08414 ATGCTCCTTACCTTCTTAATTCTCCCTGTAATTGAGAAATCTAATGCAGAATCAGAGGACATTGCCATTTACTGGGGTCAAAATGATGATGAGGGGAGCCTAACAGAAACATGTGCAACAGGAAAATACTCTTATGTAATCATAGCCTTTCTGAACAAATTTGGGAATGGCAAAACCCCTGAAATCAACCTAGCAAGTCATTGTGACCCTGCTTCCAATGGTTGCACCACCTTAAGCACAGACATCAGGAATTGCCAATTGCAAGGGATCAAAGTCTTTCTCTCCATTGGAGGTGCAGATGGAGATTACAATCTAGCTTCCTCTGATGATGCTAAAAATGTTTCTGATTACTTGTGGAACAATTTCTTAGGGGGTGGCACTGGTAGCTCATCTTCACGCCCACTTGGGGATGTTATATTAGATGGTATTGATTTTGATATTGAGAATTCCACAGGACAACATTGGGAGGTACTTGCACATGACCTCAAGTCACGTAGCACCTCAACACAAGTTGTTTACTTAAGTGCAGCACCTCAGTGTCCATTTCCTGATGGTGAACTTGGTATTGCACTTGACACAGGGATTTTTGACTATGTTTGGATACAGTTTTATAATAATCCTGATTGTGAGTATACCCAAAGCAATGTCAATAACTTTTTGAATTCATGGAATCAATGGACAACATCATTGAAAGTGGGAAAAGTCTTCTTGGGGTTGCCAGCATCGCCTGCAGCAGCAAGTACTGGCTATGTTACAGCTGATTTGTTGGCATGTGACATTCTTCCTGTCATAAACAAGTCCCCTAACTATGGTGGTGTGATGTTGTGGACAACATACTATGATAAACAAAGTGAATACAGCACCCACATCAAAAGTTCTCTTTGCACACATCAAAACCCTCCTGGATGCGGAGGAAATGATTGCCACAAAGTAAAGTGGTGGATATGGCTTATCACTGGGGTGGGAGCAGCCCTTGCAATGTCTCTCATCTTCTACATGGGCTGTACCTTATGGAGAAAAGACAAAGCAGAAGTGGATGGAAATTTGAACCAAAACAAGTCATTACATGAAATTGGAGGCAGTGCAGTACTTCCTGACAAAGCAAGAAATATTGAAATAGAGGGAAGGACTGGTAATGAGGCCAAAATGTTCAGTTTTGAAAGCATTATTGCTGCCACAAACAATTTTTCATCTACTAATAAGCTGGGAGAGGGTGACTTTGGTCCTGTTTATAAGGGAACATTAAAAGATGGCCAAGAAATAGCAATAAGGCTACTTTCCAAAACTTCAATAGAAGGGTTAATAGAGTTCATGAATGCAGCTAAGCTCATGGCCAAACTCCAGCACAGTAATCTCATAAGGCTTTTAGGGTTCTGCTTCCAGAAAGATGAAAGAATACTAGTGTATGAGTACATCTCCAAAAGAAGTTTGGACTTCTACTTGTTTGATGAAAATAGAAAGAATGAGCTAGATTGGAGAAAACGAACTAACATCATTGAAGGCATTGCTCAAGGGCTATTTTATCTTCACAATAATTCAAGACTACAAGTGATACAACAGAACTTGAAGGCAAGCAATATATTGCTCGATGAAGAAATGAATCCTAAAATATTTGATTTTGGCATGGCTCAAATGTTTGGTTTAGACCATCAGGAAGAAGATACAAATGGAATTGTTGGCAAATATGGGTGCATGTCATCAGATGATGCAATCAATGGTATTTTGTCTGTTAAAACAGATGTTTTACGTTTTGGTGTTCTGATATTGGAGATTCTTAGTGGAAAAAGGAGTAATAGTCATTATCATTCAGCTGAACCACCAAATCTAATAGGATATGCGTGGCAGCTTTGGAACTCAGGTCGAGCTCTAGAGCTAATAGACTCAGCACTAAATGAATCATGCACTCCAAATGAAGTATTGAGATATATTCATATTGGCCTCTTGTGTGTACAAGGCCATGCAGCAGGCATACCTACCATGTTAGATGTTGTTTCTTTTCTCTCAAATGATACAATTGAACTTGCTCAGCTGAAACAGCCAGCATTCTTCACCAATGTGGTTGGGGAAGACTCAGCTTCCTAA 2082 0.3982 MLLTFLILPVIEKSNAESEDIAIYWGQNDDEGSLTETCATGKYSYVIIAFLNKFGNGKTPEINLASHCDPASNGCTTLSTDIRNCQLQGIKVFLSIGGADGDYNLASSDDAKNVSDYLWNNFLGGGTGSSSSRPLGDVILDGIDFDIENSTGQHWEVLAHDLKSRSTSTQVVYLSAAPQCPFPDGELGIALDTGIFDYVWIQFYNNPDCEYTQSNVNNFLNSWNQWTTSLKVGKVFLGLPASPAAASTGYVTADLLACDILPVINKSPNYGGVMLWTTYYDKQSEYSTHIKSSLCTHQNPPGCGGNDCHKVKWWIWLITGVGAALAMSLIFYMGCTLWRKDKAEVDGNLNQNKSLHEIGGSAVLPDKARNIEIEGRTGNEAKMFSFESIIAATNNFSSTNKLGEGDFGPVYKGTLKDGQEIAIRLLSKTSIEGLIEFMNAAKLMAKLQHSNLIRLLGFCFQKDERILVYEYISKRSLDFYLFDENRKNELDWRKRTNIIEGIAQGLFYLHNNSRLQVIQQNLKASNILLDEEMNPKIFDFGMAQMFGLDHQEEDTNGIVGKYGCMSSDDAINGILSVKTDVLRFGVLILEILSGKRSNSHYHSAEPPNLIGYAWQLWNSGRALELIDSALNESCTPNEVLRYIHIGLLCVQGHAAGIPTMLDVVSFLSNDTIELAQLKQPAFFTNVVGEDSAS. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08414 693 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 675 - -
Seca3g08414 693 FunFam Acidic endochitinase SE2 19 294 - -
Seca3g08414 693 Gene3D Glycosidases 19 294 - -
Seca3g08414 693 ProSiteProfiles Protein kinase domain profile. 396 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08414 693 SUPERFAMILY Protein kinase-like (PK-like) 381 687 IPR011009 -
Seca3g08414 693 Pfam Glycosyl hydrolases family 18 21 281 IPR001223 GO:0005975
Seca3g08414 693 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 19 297 IPR001223 GO:0005975
Seca3g08414 693 Pfam Protein tyrosine and serine/threonine kinase 399 602 IPR001245 GO:0004672|GO:0006468
Seca3g08414 693 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 209 684 - -
Seca3g08414 693 Gene3D Transferase(Phosphotransferase) domain 1 472 680 - -
Seca3g08414 693 CDD GH18_hevamine_XipI_class_III 20 292 IPR045321 -
Seca3g08414 693 SUPERFAMILY (Trans)glycosidases 17 291 IPR017853 -
Seca3g08414 693 Gene3D Phosphorylase Kinase; domain 1 364 471 - -
Seca3g08414 693 FunFam Putative LRR receptor-like serine/threonine-protein kinase 370 471 - -
Seca3g08414 693 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08414 Seca-Chr3 214488843 214492081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08414 2 294 Glycoside Hydrolase AT5G24090 54.949 1.69e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08414 Glyco_hydro_18 2.6e-24 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08414 - - adu:107464076 747.273