Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08412 ATGAGATTATTTAGCTTTGCAAGCATTGTTGCTGCTACAGACAACTTTTCAGTTGCAAACAAGTTAGGAGAGGGTGGCTTTGGACCAGTTTATAAGGGGAAACTTCCAGATGGACAAGAAATAGCAATTAAGAGACTTTCTAGTAGATCAGAGCAAGGGTTGGTGGAGTTCAAAAATGAAGTTAATCTCATAGCAAAACAGCAGCATACTAATCTAGTAAGGCTTTTGGGAACTCCTATCTTAATACTTCTTTTGGTATATGCTATGTCTGTTCATGCTTACTTTGGAACAGATTCTAACAAAAGGGAAACAATATCTTGGGAACAAAGATGCAACATCATTGAAGGCATAGCTCATGGTTTGGTTTATCTCCATCATTTTTCAAGATTAAAAGTGATTCACCGAGATTTGAAAGCTAGCAACATATTACTTGATTATGAGATGAACCCCAAAATTAGTGATTTTGGCATGGCAATATTATTTGATTTTAAAGGAATAGAAGAGAACACAAAAAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGAATGGCATAGTCTCAGTGAAGACTGATGTGTTTAGCTTTGGAGTCCTATTGCTTGAGATTGTAAGTGGGAAGAAAAATAACTCTCTCTACCAGACTAATTACCATCTCAACCTTATTGGATTAGCATGGAAACTCTGGAATGAAGATAAAGGTGTGGAGTTAATAGATCCATTAATGCCAGGATCATGCCAAACAGATGAAGTACTGCGATGCATTCATGTGGGCCTGTTATGTGTACAGAACCAGGCTGTAGATAGACCAAGCATGTTAGAAGTTTCTACAATGCGTATAAATGAAACTATCCCCCTCTTTGCTTCTAAACAGTCGGCATATTATAATGATGCAGGTGAAAATGAATTGAACGTGTTTGTTGGGAAACAAAAATATTGTTCCACAAATGAAGTAACGATTTCAACAATGGATGCCAGATAA 990 0.3697 MRLFSFASIVAATDNFSVANKLGEGGFGPVYKGKLPDGQEIAIKRLSSRSEQGLVEFKNEVNLIAKQQHTNLVRLLGTPILILLLVYAMSVHAYFGTDSNKRETISWEQRCNIIEGIAHGLVYLHHFSRLKVIHRDLKASNILLDYEMNPKISDFGMAILFDFKGIEENTKRIVGTYGYMSPEYAMNGIVSVKTDVFSFGVLLLEIVSGKKNNSLYQTNYHLNLIGLAWKLWNEDKGVELIDPLMPGSCQTDEVLRCIHVGLLCVQNQAVDRPSMLEVSTMRINETIPLFASKQSAYYNDAGENELNVFVGKQKYCSTNEVTISTMDAR. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08412 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca3g08412 329 SMART serkin_6 16 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08412 329 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 88 - -
Seca3g08412 329 Pfam Protein kinase domain 17 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08412 329 Gene3D Transferase(Phosphotransferase) domain 1 90 296 - -
Seca3g08412 329 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Seca3g08412 329 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 88 289 - -
Seca3g08412 329 ProSiteProfiles Protein kinase domain profile. 16 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08412 329 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 328 - -
Seca3g08412 329 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08412 Seca-Chr3 214458131 214459629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08412 4 297 Receptor kinase-like Gene Family AT4G05200 54.333 6.21e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08412 Pkinase 3.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08412 - - gmx:100811504 436.032