Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08411 ATGGGTTATGGTTGTGTGAGGGCGGAGATGGTATTAATATTATTACTAATCTGCTGCTTTCTTGTCCCAGCATCAAGGGCTGAAAGCTTCAACTGCTGGCAGAGAAGGATCAGGTGTCAAGCCTTGGTTGGTTTCAGGCCGCGAGTGCCAACTACCTTAGGGGCCATCCAAACCCTCTTTAACGTGACTCACGTGGCAGACATTCTCGGTGCTAACGGCCTTCCGGAATGGACCCAACCCAACAATTTCAAGGTGGAAGTGAATCAGTTTATCAGGATACCTTTTGAGTGCGACTGCAGTACTGGTTTCTACGGTGTGCCCACTAACCCGCCAGTGTACAAGGTGCAAACGGGTGATTATAATATTTCTTATATAATAACGAGCGTGTTCTCGGGATTGGTGGGTTTAACGGATATCAAGAATGGTAACGATATGAAGGATTTTGATTTTAACAATTTGACGACGGGACAAGAACTGCGAATGCCACTCCCTTGTAGCTGCGGGCAGGTGAATGGGGTGGATGTGGTTCACTTTGGATTGACGCTGGAATATGGACTCACCGTGGAACAGATAGCAGAGGAATACCATGTCCAGCCACAAACCATCTGGACTTTGAACGATGCAACGAGTCCTGATCTTATCCTTGGCCGGGCTTTAGATATTCCTCTCCCAGTCTGTTCTTCGATGGTGAGAAACGATTCATTGGACTACCCTTTGCTTGTTCCACATGGTTCTTATGTCTACACCGCGAATGGATGTGTGAGATGCCACTGCGATGCTGCCAAAAACTGGACATTATCATGCGTGCCATCCAATCATAAGCCAACAAACTGGTCGTCTTGCCCATCTATGCAATGCAGCAATTCAACCAGCAGCATGTACATTGGCAACACCACATATTCAAGTTCTCACAATCTTACAATTTGTGCCTACGCTGGTTACACAAGTCAAATCATCTTCACTACCCTTGCAACAATGTCTATTATTCCTCCCGGCATTGTTACAGAGAGTGCAGAAAACAGGTGGTGGATATCGCTTATTGTGATAGGAGGAGTTATTATTGTACTTATATTCTGCTACTTGTGCTGTGTGATCTGGAGAAAATACAAGATAGAAGCTGACAGAAAAAAGAAAATGAAGATAATAATAAGGGAAATTGGAGTCAGTACCGTGGCATCCACCATATATCATAAAACAAAGAGACACAACAAAGATGGCAAGGCCAACAATGAAATGCGGTTATTTAGCTTTGCAAGCATTGTTGCTTCTACAGACAACTTTTCAGTTGCAAACAAGTTAGGAGAGGGTGGCTTTGGACCAGTTTATAAGGGGAAACTTCCAGATGGACAAGAAATAGCAATTAAGAGACTTTCTAGTAGATCAGGGCAAGGGTTGGTGGAGTTCAAAAATGAAGTTAATCTCATAGCAAAACAGCAGCATACTAATCTAGTAAGGCTTTTGGGGTTCTGCATACAAAGTGAAGAAATGTTATTAATCTATGAGTACATGCCCAACAAAAGTTTAGACTTTCATATCTTTGATTCTAACAAAAGGGAAACAATATCTTGGGAACAAAGATTCAACATCATTGAAGGCATAGCTCATGGTTTGGTTTATCTCCATCATTTTTCAAGATTAAAAGTGATTCACCGAGATTTGAAAGCTAGCAACATATTACTTGATTATGAGATGAACCCCAAAATTAGTGATTTTGGCATGGCAATATTATTTGATTTTAAAGGAATAGAAGAGAACACAAAAAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGAATGGCATAGTCTCAGTGAAGACTGATGTGTTTAGCTTTGGAGTCCTATTGCTTGAGATTGTAAGTGGGAAGAAAAATAACTCTCTCTACCAGACTAATTACCATCTCAACCTTATTGGATTAGCATGGAAACTCTGGAATGAAGATAAAGGTGTGGAGTTAATAGATCCATTAATGCCAGGATCATGCCAAACAGATGAAGTACTGCGATGCATTCATGTGGGCCTGTTATGTGTACAGAACCAGGCTGTAGATAGACCAAGCATGTTAGAAGTTTCTACAATGCTTATAAATGAAACTATCCCCCTCTTTGCTCCTAAACAGCCGGCATATTATAATGATGCAGGTGAAAATGAATTGAACGTGTTTGTTGGGGAACAAAAATATTGTTCCATAAATGAAGTAACAATTTCAACAATGGATGCCAGATAA 2238 0.412 MGYGCVRAEMVLILLLICCFLVPASRAESFNCWQRRIRCQALVGFRPRVPTTLGAIQTLFNVTHVADILGANGLPEWTQPNNFKVEVNQFIRIPFECDCSTGFYGVPTNPPVYKVQTGDYNISYIITSVFSGLVGLTDIKNGNDMKDFDFNNLTTGQELRMPLPCSCGQVNGVDVVHFGLTLEYGLTVEQIAEEYHVQPQTIWTLNDATSPDLILGRALDIPLPVCSSMVRNDSLDYPLLVPHGSYVYTANGCVRCHCDAAKNWTLSCVPSNHKPTNWSSCPSMQCSNSTSSMYIGNTTYSSSHNLTICAYAGYTSQIIFTTLATMSIIPPGIVTESAENRWWISLIVIGGVIIVLIFCYLCCVIWRKYKIEADRKKKMKIIIREIGVSTVASTIYHKTKRHNKDGKANNEMRLFSFASIVASTDNFSVANKLGEGGFGPVYKGKLPDGQEIAIKRLSSRSGQGLVEFKNEVNLIAKQQHTNLVRLLGFCIQSEEMLLIYEYMPNKSLDFHIFDSNKRETISWEQRFNIIEGIAHGLVYLHHFSRLKVIHRDLKASNILLDYEMNPKISDFGMAILFDFKGIEENTKRIVGTYGYMSPEYAMNGIVSVKTDVFSFGVLLLEIVSGKKNNSLYQTNYHLNLIGLAWKLWNEDKGVELIDPLMPGSCQTDEVLRCIHVGLLCVQNQAVDRPSMLEVSTMLINETIPLFAPKQPAYYNDAGENELNVFVGEQKYCSINEVTISTMDAR. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08411 745 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 392 502 - -
Seca3g08411 745 ProSiteProfiles LysM domain profile. 111 161 IPR018392 -
Seca3g08411 745 ProSiteProfiles Protein kinase domain profile. 427 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08411 745 SMART serkin_6 427 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08411 745 Pfam LysM domain 187 222 IPR018392 -
Seca3g08411 745 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase CES101 isoform A 503 703 - -
Seca3g08411 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Seca3g08411 745 Gene3D Transferase(Phosphotransferase) domain 1 503 704 - -
Seca3g08411 745 SUPERFAMILY Protein kinase-like (PK-like) 410 712 IPR011009 -
Seca3g08411 745 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 285 744 - -
Seca3g08411 745 CDD STKc_IRAK 433 698 - -
Seca3g08411 745 Gene3D Phosphorylase Kinase; domain 1 388 502 - -
Seca3g08411 745 Pfam Protein kinase domain 428 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08411 Seca-Chr3 214441855 214446099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08411 398 713 Receptor kinase-like Gene Family AT4G05200 54.747 1.02e-119 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08411 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08411 - - gmx:100811504 1002.66