Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08404 ATGGAGGGTGCTTTTAATGATAAACACAAGCAACAAGGGCTTTTGATTTATTACCCTGCTTCTCCCCAAGACTTGAGAGATTTCAATTTGGGGATAGAGAAAGAAGATGCCTCATCTCTAGGAGAGGTCTTAGAAGACTGCATTGGAGGCTTTGAGTCTCATCAACAACCTGAATTGACTCCCCTTTGTTCAGGCTTAAGGCCACGGTTTCACCTGAGCAAAGTTTTTAAACGATGGAAAGAAAGATCAATTAAGCACCTAGCTTCCTTCCCTCATTTGTGTTTGCCAAACATAACAAAATCTAAATGCAAAATCATGAAAGAGAATCTTGTTCTATGTAATCTATACAACTTCAGATCTTCTTTGGTGAATTTCAGTCTCTCTGACCTAAAAAATGCAACCAACAATTTTAGCAATGAAAATTTAATTGGAAGAGGTGGCTATGCTGAGGTTTACAAGGGTCGCCTCAGAAATGGGCAACTAGTGGCTGTTAAACGACTGAATAAAGGGACTCCAGATGAGAGGACATCAAGATTTCTATCCGAGTTAGGCATTATTGCTCATGTTAACCATCCTAACACTGCCAAGTTTATTGGATGTGGTGTGGAAGGAGAAACACTTGTCTTTCAACTATCTCCACTGGGAAGTTTAGAATCTCTTCTTCATTCAGGTTCAAATAAAATCAAATTGGATTGGAATAAAAGGTATAAAATTGTTATAGGGATAGCTGATGGTCTCCTCTATCTTCATGAGCATTGTGAAAAGAGAATCATTCATAGAGATATTAAAGCAGAGAATATTCTGCTCACAGATAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAAAACAATGTACACACCATAATGTAGCAAAATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGTGTTTTACTTTTGGAGATTATAACTGGGCGTCGAGCTTTGGATAATTTGCATCAAAGTGTTGTGTTATGGGCAAATCCTTTGCTTGATGCTAATAATATCAAGGACCTTGTTGATCCTTCTCTTGGTGACAATTATGACCGACAACAGATGGATCATATTGTTTTGACTGCATCTTTGTGTGTCGAGAAGTCTCCTATCTTACGCCCCCGCATGAGTCAGATTGCAGTACTGCTAAGAGGCGATGACTTTGTCCTGGAATCTACGAAAGAATGCCCGAGGCAATCTCTCATAAGAACACACTCAGAGGAGGTACAGGATGTGCAAGAAAACAACTCAACAAACCTTCTAAGTGATCTCAGTTGA 1338 0.3901 MEGAFNDKHKQQGLLIYYPASPQDLRDFNLGIEKEDASSLGEVLEDCIGGFESHQQPELTPLCSGLRPRFHLSKVFKRWKERSIKHLASFPHLCLPNITKSKCKIMKENLVLCNLYNFRSSLVNFSLSDLKNATNNFSNENLIGRGGYAEVYKGRLRNGQLVAVKRLNKGTPDERTSRFLSELGIIAHVNHPNTAKFIGCGVEGETLVFQLSPLGSLESLLHSGSNKIKLDWNKRYKIVIGIADGLLYLHEHCEKRIIHRDIKAENILLTDNFEPQICDFGLAKWLPKQCTHHNVAKFEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDNLHQSVVLWANPLLDANNIKDLVDPSLGDNYDRQQMDHIVLTASLCVEKSPILRPRMSQIAVLLRGDDFVLESTKECPRQSLIRTHSEEVQDVQENNSTNLLSDLS. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08404 445 Pfam Protein tyrosine and serine/threonine kinase 140 399 IPR001245 GO:0004672|GO:0006468
Seca3g08404 445 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 113 211 - -
Seca3g08404 445 SUPERFAMILY Protein kinase-like (PK-like) 117 402 IPR011009 -
Seca3g08404 445 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 213 417 - -
Seca3g08404 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca3g08404 445 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Seca3g08404 445 ProSiteProfiles Protein kinase domain profile. 137 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08404 445 Gene3D Transferase(Phosphotransferase) domain 1 213 415 - -
Seca3g08404 445 SMART serkin_6 137 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08404 445 Gene3D Phosphorylase Kinase; domain 1 98 210 - -
Seca3g08404 445 PANTHER OS08G0249100 PROTEIN 71 436 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08404 Seca-Chr3 214275545 214279679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08404 122 409 Receptor kinase-like Gene Family AT1G53420 42.568 2.20e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g08404 PK_Tyr_Ser-Thr 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08404 - - cam:101512181 593.964