Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08403 ATGATAACACCGAACACGGGGAAGAAAACTGAAATGAAGGACATGAATATACTGAACATGAAGAAGAAGCCCAACATGAAGGAGATCAAGATACTCAACATGAGGAAGAAAACCAGAATGAAGGAGATGAAAATAATGAACATGAGGAAGTTGTCAATGAACGTATTTGCAACTAAAAAAGGGAAAGTTATCTCTAGTAGGAAAACTGGGAGGGTTTTGCAACAAATTTTTTTTTGCAACAAAGAAGGTAAACGTGTAGATAGTGGTGTGCCTATGGAAAAACGTCAACGTGAGCCCAAAGCTGAGACTAGATGTTATTGTAGGGCAGAATTTCGAGCGCACGTGGACATCAACTCAGGACGATGTTTCCGGAAGAAAGATATCTACAATCAAATTATCAAACAACGACGGTTGCAAAATTCAGATGCAGAATCATCTGTAAAGTACTTGCATAACTTGGGAGTCAATGACCCTTTGATGTATACTCGCCACACAATTGTCCCAGATAACAAGCTTAAGCACTTGTTCTGGTGTGATGGTAAAAGTGCAATAGTTGCCAATGAAATTGAGGAAACATACATTTGGCTACTGCGTCTGTTTTTAGAAGCAATGAAAGGTAAAATGCCCAGGTCAGTCATAACTGATGGAGACCTCGCAATGAGAAATGCCATTAGAGTTGTGTTTCCAAGAGTTCATCACCGTTTGTGTGCTCGGAATCTAGCTCGTAATGCGACCTCTAATGTTGGAATCCTTGCCTTCATAAAAGTATTTGAAAATTGTATGTTTGCCAATTTTGATGTTCGGGAATTTCAAATAAAATGGAGTGAATTAATCTCCAAATTTGATTTACAAGATAAGCCATGGATTAGAGAGATATATCAAAAGAGGGAAATGTGGGCTGCAGCATACATGAGGGGAAAATTTTTTGCAGGCTTTAGGACAACATCAAGGTGTGAAGGTTTGCACTCAGAGTTAGCAAAATTTGTCCACTCCCGTCATAATCTAACATATTTCTTACATCACTATAATCGATGTGTTGAGCATATGCGGGTCAGAGAAATGGAAGATGACTTTTCCTCCATACATGGTGATCCATCATTGCAAATCAATCTTCAAGGTCTTGAAAGGTCAGCTGCCAATCTTTTAACTAGGAAATTGTTCTTTCTATTTCATCCAGTGCTTCAGAAGGCAACTAGTATGAATGTGGTGGCATGTAGAGACTTGTACTCATACTCCTTATACACGATGTGCAAGCGTGGGGGGGGGGGCAAGGAATGGAATGTGTCATATAATCCATCCAGTAATGAATTTAAGTGCCTATGCATGTGGTTAGAGTCACGTGGGTTACCATGTGTACACACAATTGGTGTGTTGGACCATCTAAACATCAATGAGCTCCCAAAAGGTTTGGTCCTAAAAAGATGGACGAAAGGAGCAAAGGACAATATTATTAGTTACAACAATGATAGTGGTACTTGGGACTCACAAAGGATTTTTAGACGTGATGCTCTAAATGATATATACAGAAAGTTGTCTGTTGTGAATTCTGTAACTATTGAGGAATATAATGATGCGATGGAAAGGTCTTTAAAAGAACTTGCAGAAAAAGAGGCAAAGAGGGCATGTGATATGGCTGGTGGGAGAGAACCGACGTTAAGTGATCATGATAGACTGAGGAACCCTCTGCCCGCAAGGCACAACGGAAGCGTGAGAGCAAGCACTTCCACTGGAGGATTGAGGGTTAGGCGCACAACCAAGTGCTCCATTTGTCACGTGGCTGGCCATAATAAGGACACATGCCCACAACGAGCGCAAGGTGGACATACTGCACAATCTACATGCGGGGGGTGGGAACAAGACGATGATTATCTGAGTATATCGTTTAGAGATGGGAAACTTTCACGGCGAAGCTGCGTCCACGAAGTTGGCCATCACGCAACTTACTTTGGATGGAAAATACCAGGCAATAGGAGGAGTTCACATGAAGGTAGCGAGCAGCACGAAGAAGAGCTACACGTGGAGGACAATACAGAAACAAAGATGAACAATGTCCACACATTGGCAAACACTGTTTCTGGCTTAGCTTCCTCTGTCGATCACATGACTGAAATTATGAAGAAGATGATAGACCGTTTGGATATGTTGGAGAAATCATACCAGGACGTGAAAAAGAGGCAAAGTCAACTTAAAAGTTCCATGGCCTTAGATTGCATTGAACGTGCAGACAAACCAATTGAGCTATCCAACAGTAACTTGACACCAATAATAGACTTAACAAATGATGGAGAAATAAGGATTATATATGATCACATTGACAAAAAGAACTCCCCCGCAACGCCCAATAACTATTATAGATCCCCAAAGGATAGCACTTATCATAAAAAAGAAAACTATGTGAAAAAGCTCAGTTTCAAGGGGTCTCCCGATGGAATGGAATTGAAAGTTCCAAAGATAGAGCCCCAAACTATAAGCATACCCCCACAAAAAGGACTGTTGTTCATAAGATCCAAATTTAAGCCATTTGAAGAAATGCATCTTACACACGTACAAACACATGTTTCAGTGTACATGTTTCATGAAGATAATCTTCCAAGCGAAATCATTTTCAAGATTGATGAAACACAAGGTACAAGAGAAGAGTTTGATATCCTACGTCCAGATAGGGGCATATCTCTTGAGATTATTAAGTTCGTTGCATTGAAGGCTACATATATTCTACGAAAAAGTTGCTCCCAAACATTTTGGATGCTTCCACCAAATTTCACTAGGGATGTCTTCCGAGGATATGAAGTAGATCAACTCTTGAAAAAATATAAAGACAAATGGTTGGCCACATATTCTGGACTACATTATATATATGTCCCTATTCAAAATGTGTCAGACCAGTGGTTCTTGACGGTAGTGTCAATTGAGGATAAGGTTATCTACCGCTTGGATTCCTTCTTTCCAGATCGATGTGTCCATCCAAGGCGTCACACCATGATGAAAGTGTGCAAGGCATTGTCTGGAGTGATTAGAGCTGGTGTTTTCCCAAATAAATGCTTCAAAAACTTACAAGATTTAGAGAATTGGGAAGTGACTGAGCCTGTAGGAATGCCTTTCGTACCTTATGGGGAAAATTCTGCAGTCTATGTCCTACACTGGATGCATATAATGCACGCATTCAACCCAAACATTAGGGGAGAGGTAAATGAGACAAATGTCAGAATGAGGGATGCCATGAATCTTCTCTTTGGGGATCATAATGCATGTTGGAGCACTTTGCAATTCAAGGCAGAATCATTTTGGGGGATTGACCATGATAGCGGGGTAAATGTCATTAGTCCAGCCTTTCCAGAAATGGTGAGACATGACTCACATTTGGGAATGACAACGAAGAAAAAGAAAGCATAA 3393 0.4055 MITPNTGKKTEMKDMNILNMKKKPNMKEIKILNMRKKTRMKEMKIMNMRKLSMNVFATKKGKVISSRKTGRVLQQIFFCNKEGKRVDSGVPMEKRQREPKAETRCYCRAEFRAHVDINSGRCFRKKDIYNQIIKQRRLQNSDAESSVKYLHNLGVNDPLMYTRHTIVPDNKLKHLFWCDGKSAIVANEIEETYIWLLRLFLEAMKGKMPRSVITDGDLAMRNAIRVVFPRVHHRLCARNLARNATSNVGILAFIKVFENCMFANFDVREFQIKWSELISKFDLQDKPWIREIYQKREMWAAAYMRGKFFAGFRTTSRCEGLHSELAKFVHSRHNLTYFLHHYNRCVEHMRVREMEDDFSSIHGDPSLQINLQGLERSAANLLTRKLFFLFHPVLQKATSMNVVACRDLYSYSLYTMCKRGGGGKEWNVSYNPSSNEFKCLCMWLESRGLPCVHTIGVLDHLNINELPKGLVLKRWTKGAKDNIISYNNDSGTWDSQRIFRRDALNDIYRKLSVVNSVTIEEYNDAMERSLKELAEKEAKRACDMAGGREPTLSDHDRLRNPLPARHNGSVRASTSTGGLRVRRTTKCSICHVAGHNKDTCPQRAQGGHTAQSTCGGWEQDDDYLSISFRDGKLSRRSCVHEVGHHATYFGWKIPGNRRSSHEGSEQHEEELHVEDNTETKMNNVHTLANTVSGLASSVDHMTEIMKKMIDRLDMLEKSYQDVKKRQSQLKSSMALDCIERADKPIELSNSNLTPIIDLTNDGEIRIIYDHIDKKNSPATPNNYYRSPKDSTYHKKENYVKKLSFKGSPDGMELKVPKIEPQTISIPPQKGLLFIRSKFKPFEEMHLTHVQTHVSVYMFHEDNLPSEIIFKIDETQGTREEFDILRPDRGISLEIIKFVALKATYILRKSCSQTFWMLPPNFTRDVFRGYEVDQLLKKYKDKWLATYSGLHYIYVPIQNVSDQWFLTVVSIEDKVIYRLDSFFPDRCVHPRRHTMMKVCKALSGVIRAGVFPNKCFKNLQDLENWEVTEPVGMPFVPYGENSAVYVLHWMHIMHAFNPNIRGEVNETNVRMRDAMNLLFGDHNACWSTLQFKAESFWGIDHDSGVNVISPAFPEMVRHDSHLGMTTKKKKA. 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08403 1130 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 536 IPR031052 GO:0006355
Seca3g08403 1130 Coils Coil 519 539 - -
Seca3g08403 1130 Pfam Ulp1 protease family, C-terminal catalytic domain 949 1052 IPR003653 GO:0006508|GO:0008234
Seca3g08403 1130 ProSiteProfiles Zinc finger SWIM-type profile. 426 462 IPR007527 GO:0008270
Seca3g08403 1130 MobiDBLite consensus disorder prediction 543 577 - -
Seca3g08403 1130 SUPERFAMILY Cysteine proteinases 857 1053 IPR038765 -
Seca3g08403 1130 MobiDBLite consensus disorder prediction 543 562 - -
Seca3g08403 1130 Coils Coil 705 725 - -
Seca3g08403 1130 Pfam MULE transposase domain 183 243 IPR018289 -
Seca3g08403 1130 Gene3D Adenoviral Proteinase; Chain A 837 1077 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08403 Seca-Chr3 214261916 214272269 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g08403 Peptidase_C48 0.00016 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08403 - - tpra:123913749 458.373