Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08402 ATGCCCAAGAAGATTCAAAAAACCCTTCAAGATTACCTCTTCAAGATCAAAAAACCTCACCCCCCTCAAATCCAATTACCCTTTAACTCAAAATCAAAAAGCTGGATTCTTTCTGGCTGCAAGCATCCAAAGACACCATCTTTTGCCTTAGACGACAGAAATAATCACAAGGTCGACGATGCAGCCACTTTAGCAGACGTTGATCGTTTCCTCTTCGAGAATTTCAGGTCCCTATACCTCAAAGACGATGAAGAACCAGAAAATTACAAAAGGGTCTCTGAAGAAAGTCACAACGATGAAGAAATTCCACTGCCTGATCTCTGTGGCTCCACTCGATTCTTCGTGAAGCCAGGCATGTCAGGGTCTCTGTTAGAGGATGCTCTGACAATCACAAGTGATGAAGCAGGGTCGAGTTCAACATCAATCACAACACTCAATGATTCATGCTCTCTAAAGGAGGACATGAATAATAATAATAATCACATTCATACTCTTCCTGATAATTGTGTTGCGCTATTGACTTACTCGATGAGTCCCTATGAGGAATTTCGGCGTTCAATGCAGGAAATGGTGGAAGCAAGGACCAAATATGGTGAAGGGGTGATTGATTGGGATTTCATGGAGGAGCTATTGTTCTGTTACTTGAACCTCAATGAGAAGAAGTCCCATAAGTACATTCTCAGTGCTTTTGTGGATCTAATCACTGTTATGCGTCGGAATTCAGAGACAGATTCGGTAAAGCCACGGAGTGTTCGAACTATTAGGATTGGTGGGGAGGTGAGGAAGAAGAACAATGCGGTAACATTAGAATTTGGATCTTCCTAG 825 0.423 MPKKIQKTLQDYLFKIKKPHPPQIQLPFNSKSKSWILSGCKHPKTPSFALDDRNNHKVDDAATLADVDRFLFENFRSLYLKDDEEPENYKRVSEESHNDEEIPLPDLCGSTRFFVKPGMSGSLLEDALTITSDEAGSSSTSITTLNDSCSLKEDMNNNNNHIHTLPDNCVALLTYSMSPYEEFRRSMQEMVEARTKYGEGVIDWDFMEELLFCYLNLNEKKSHKYILSAFVDLITVMRRNSETDSVKPRSVRTIRIGGEVRKKNNAVTLEFGSS. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08402 274 NCBIfam uncharacterized plant-specific domain TIGR01568 170 236 IPR006458 -
Seca3g08402 274 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 98 237 IPR038933 GO:0045892
Seca3g08402 274 ProSiteProfiles OVATE domain profile. 172 236 IPR006458 -
Seca3g08402 274 Pfam Transcriptional repressor, ovate 176 235 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08402 Seca-Chr3 214243781 214244605 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca3g08402 Ovate 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08402 - - lja:Lj3g3v0160750.1 330.102