Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08398 ATGAGCGTGGTTGGTTTTGATTTTGGTAATGAGAGCTGCATTGTTGCTGTTGCAAGGCAGAGGGGGATTGATGTTGTGCTCAACGATGAGTCCAAACGTGAAACTCCTGCAATCGTATGCTTTGGTGAGAAACAAAGGTTTCTAGGAACTGCTGGGGCTGCATCTACTATGATGAACCCAAAGAATTCGATCTCACAGATAAAGCGGTTAATTGGTAGACAATTTTCTGATCCTGAATTGCAGCAGGATCTGAAGTCATTGCCTTTTGTTGTCACTGAAGGACCTGATGGATTTCCATTAATTCATGCACGGTACCTGGGTGAAGTTAAAACATTTACACCTACCCAAGTCTTTGGAATGATGTTATCAAATCTTAAAGAAATAGCCCAGAAAAATCTGAATGCAGCCGTTGTTGATTGTTGCATTGGAATTCCAGTTTATTTTACTGATCTCCAGAGGAGAGCAGTCTTGGATGCAGCCACCATCGCAGGTTTGCACCCACTTCGCCTGATTCATGAAACGACAGCAACTGCCTTGGCTTATGGAATTTATAAGACCGATCTTCCTGAAAATGATCAGCTCAACGTTGCTTTTGTTGATGTTGGACATGGTAGCATGCAAGTGTGCATTGCTGGATTTAAAAAGGGGCAGCTGAAAGTGTTGTCCCATGCATATGATAGGTCTTTGGGTGGTAGGGATTTTGATGAGGTCTTGTTCCATCATTTTGCTGCAAAATTTAAGGAGGAGTACAAAATTGATGTTTACCAGAATGCCAGGGCTTGTCTAAGGCTGAGGGCTGCTTGTGAGAAGTTGAAGAAGGTGCTTAGTGCAAATCCAGAGGCACCTCTGAACATTGAGTGCTTAATGGAAGAGAAGGATGTGAGGAGCTTTATTAAGCGTGAGGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTGAAGGGACCTTTGGAGAAGGCACTTGCAGAAGCAGGTCTTACAGTTGAGAATGTCCACATGGTTGAGGTGGTTGGTTCTGGTTCTCGTGTACCAGCTATAAACAAAATATTGACGGAATTTTTTAAAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGTTGTGCTTTGCAATGTGCAATTCTCAGTCCAACCTTTAAAGTACGGGAGTTTCAGGTCAACGAAAGCTTTCCTTTCTCTATTTCTCTTTCGTGGAAAGGTTCTGGTCCAGATGCACAGGATGGTGGATCAGATAACAAGCAGAGTGCCCTTGTTTTCCCCAAGGGAAATCCCATACCAAGTATCAAGGCACTGACATTTTACAGGACAGGAACCTTTTCAATTGATGTACAATATGATGATGTGAATGGTTTGCAAACACCTGCAAAGATCAGCACATATACTATTGGTCCTTTTCAATCTACAAAAGGTGAAAAGGCAAAGGTTAAAGTGAAAGCTCGTTTGAATCTGCATGGAATTGTATCTGTTGAGTCAGCAACTCTCATGGAAGAGGAAGAAATTGAGGTTCCTGTTGCCAAAGAATCAGCAGGTGAAAATACCAAGATGGAAACTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCTAGCTCCAATGACAATGACGTTAATATGCAGGATGCCAAGGCTACTGCTGATACCCCTGGGGCTGAAAATGGCGTTCCTGAGACAGGAGATAAGCCCGTGCAAATGGAAACTGATACCAAGGTAGGTTGTGAAAGGAGATTTAAGGTTGAGGTTCCAAAGAAAAAAGTGAAGAAAACAAACATTCCTGTGGCAGAGGTAGTTTATGGAGCATTGGCACCTGTGGATGTCCAGAAAGCTGTAGAAAAGGAGTTTGAAATGGCTTTACAAGATCGAGTGATGGAGGAAACAAAAGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCACTGCTTCAGACAGGGAAGATTTTACTGCTAAACTTCAGGAGGTGGAAGACTGGTTATATGAGGAAGGTGAAGATGAAACCAAAGGTGTATACATTGCCAAGCTAGAAGAGCTCAAAAAGCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACATGGATAGAGGCACAGTAATTGATCAACTCATCTATTGTGTAAATAGTTACAGAGAAGCTGCAATGTCAAATGATCCCAAATTTGATCACATTGACATCAATGAGAAACAGAAGGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTTAGGGAGAAGAAGCAGCAACAGGACTCTCTCCCCAAATATGCCACCCCTGTACTCTTGTCAGCTGACATAAGGAAGAAAGCTGAGGCAGTTGATAGGTTCTGCAAGCCAATTATGATGAAACCAAGGCCGGCCAAGCCAGCTACCCCTGAAGCACCAGCAACCCCACCTCCTCAGGCTGGTGAGGAGCAGCAGCAGCAGCAAGCACCACATCAGGAGGATGCTAATGCCAGCACTAATGAGACTGCAGGGGACAGTGGTAATCAGGTCCCACCAGCCTCTACTGAACCTATGGAGACTGACAAATCAGAGAACACAGGCTCTGCCTAA 2598 0.4369 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFLGTAGAASTMMNPKNSISQIKRLIGRQFSDPELQQDLKSLPFVVTEGPDGFPLIHARYLGEVKTFTPTQVFGMMLSNLKEIAQKNLNAAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLIHETTATALAYGIYKTDLPENDQLNVAFVDVGHGSMQVCIAGFKKGQLKVLSHAYDRSLGGRDFDEVLFHHFAAKFKEEYKIDVYQNARACLRLRAACEKLKKVLSANPEAPLNIECLMEEKDVRSFIKREEFEQLSLPILERVKGPLEKALAEAGLTVENVHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSGPDAQDGGSDNKQSALVFPKGNPIPSIKALTFYRTGTFSIDVQYDDVNGLQTPAKISTYTIGPFQSTKGEKAKVKVKARLNLHGIVSVESATLMEEEEIEVPVAKESAGENTKMETDEAPADAAAPPSSNDNDVNMQDAKATADTPGAENGVPETGDKPVQMETDTKVGCERRFKVEVPKKKVKKTNIPVAEVVYGALAPVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVTASDREDFTAKLQEVEDWLYEEGEDETKGVYIAKLEELKKQGDPIEERYKEYMDRGTVIDQLIYCVNSYREAAMSNDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLPKYATPVLLSADIRKKAEAVDRFCKPIMMKPRPAKPATPEAPATPPPQAGEEQQQQQAPHQEDANASTNETAGDSGNQVPPASTEPMETDKSENTGSA. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08398 865 FunFam Heat shock 70 kDa protein 14 387 602 - -
Seca3g08398 865 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 604 704 IPR029048 -
Seca3g08398 865 Pfam Hsp70 protein 3 705 IPR013126 GO:0005524|GO:0140662
Seca3g08398 865 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 601 IPR029047 -
Seca3g08398 865 MobiDBLite consensus disorder prediction 796 865 - -
Seca3g08398 865 PRINTS 70kDa heat shock protein signature 332 348 - -
Seca3g08398 865 PRINTS 70kDa heat shock protein signature 140 160 - -
Seca3g08398 865 PRINTS 70kDa heat shock protein signature 30 42 - -
Seca3g08398 865 PRINTS 70kDa heat shock protein signature 2 15 - -
Seca3g08398 865 PRINTS 70kDa heat shock protein signature 363 383 - -
Seca3g08398 865 FunFam Heat shock 70 kDa protein 4 1 78 - -
Seca3g08398 865 Gene3D - 5 374 - -
Seca3g08398 865 MobiDBLite consensus disorder prediction 799 813 - -
Seca3g08398 865 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Seca3g08398 865 PANTHER HSC70CB, ISOFORM G-RELATED 1 857 - -
Seca3g08398 865 CDD HSPA4_like_NDB 2 381 - -
Seca3g08398 865 Gene3D Actin; Chain A, domain 4 230 313 - -
Seca3g08398 865 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Seca3g08398 865 FunFam Heat shock 70 kDa protein 4 111 206 - -
Seca3g08398 865 FunFam Heat shock 70 kDa protein 4 38 113 - -
Seca3g08398 865 MobiDBLite consensus disorder prediction 507 567 - -
Seca3g08398 865 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 513 IPR029047 -
Seca3g08398 865 Gene3D - 606 713 IPR029048 -
Seca3g08398 865 FunFam Heat shock 70 kDa protein 4 604 714 - -
Seca3g08398 865 Gene3D - 186 360 - -
Seca3g08398 865 MobiDBLite consensus disorder prediction 507 523 - -
Seca3g08398 865 FunFam Heat shock 70 kDa protein 4 230 313 - -
Seca3g08398 865 Gene3D - 38 113 - -
Seca3g08398 865 MobiDBLite consensus disorder prediction 815 865 - -
Seca3g08398 865 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 719 802 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08398 Seca-Chr3 214170179 214175531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08398 4 406 Calmodulin-binding Proteins AT1G16030 37.192 5.00e-87 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08398 K09489 - gmx:100778196 1452.96