Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08391 ATGGATGATAGTAGTGAGGATGATGCAAGGTATTCCCCTAATAACACATATGGTATTAGTTACCGCCAAGGTTATGGTCATGTGAATCATCAGAGAGTTCCTGTGAGGAATTCTCCATATTCTCAACCAATTGCAAGTGAATCTGCCCAAGATAATAATGAGGAGGAGGAGGAAGAAGAGGAAGAGCATGATGGGAACAATGATGAGGATGATGATGATGACAATGATAAGCAGAGAAGTTACACCATGACCATGAAGACTGAAGATGATTTAGAGTGGCACCCGAAAAGGCAAAAGGTGAAGAGTTTGATTTCAACCTATGAATTTGCACCTAGGGTGCCAGCACCATCAGGGGGTAGGAATTCCCTTACTGACTGGACTGAGCATGAGACATTTGTTCTTCTTGATGCATGGGGTGAGCGGTTTCTTCAACATGGAAGGAAGAGTCTTAGATCTGAGGAGTGGCAAGAAGTTGCAGAGAAGGTATCAAAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGCAGAAATCGTCTAGATACATTGAAGAAAAAATACAAGAAGGAGAAGATTAAATTTCCGGAAATGTGTGGTGAAAATAGCAAATGGGTTTATTTTAAAAGGATGGATAAGCTAATGTCTTCTCCACCACAACAAGGGGGTCTCTCTTGTGGTATAGACTCAGGAGAGTATGTTTTTCTGAATCCTAGAGTTTATTTGAACTGTGCAAATGGGTTGGATGAAATGAAGGATAGTCCTGAGAATACAGAATCTATTGGTGAAGAAGATTCAGATGGACCTCAAGCAAAGAAAAGAAGGAAAGGAAGGGGCAATGGTGGTGGTTCTTCCTTCAGATTACTTGCTGATTCCATTAAGAAATTCAGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGGTGGAACTGGAAAAGATGAGGATGGATTTCCTTAAGGACTTGGAAATGCAGAAGAGGCAGATTGTAGAAAGATTACAGGGTGAGATTTCAAAACTAGAGCAGAGAGATGATAATGATGATTCTGCTGAGAATGGTATGTGA 1068 0.4007 MDDSSEDDARYSPNNTYGISYRQGYGHVNHQRVPVRNSPYSQPIASESAQDNNEEEEEEEEEHDGNNDEDDDDDNDKQRSYTMTMKTEDDLEWHPKRQKVKSLISTYEFAPRVPAPSGGRNSLTDWTEHETFVLLDAWGERFLQHGRKSLRSEEWQEVAEKVSKVSKIERTDTQCRNRLDTLKKKYKKEKIKFPEMCGENSKWVYFKRMDKLMSSPPQQGGLSCGIDSGEYVFLNPRVYLNCANGLDEMKDSPENTESIGEEDSDGPQAKKRRKGRGNGGGSSFRLLADSIKKFSKIYEKIENSKRQQMVELEKMRMDFLKDLEMQKRQIVERLQGEISKLEQRDDNDDSAENGM. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08391 355 Coils Coil 298 318 - -
Seca3g08391 355 Gene3D - 126 188 - -
Seca3g08391 355 MobiDBLite consensus disorder prediction 250 284 - -
Seca3g08391 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 114 346 IPR044823 -
Seca3g08391 355 MobiDBLite consensus disorder prediction 336 355 - -
Seca3g08391 355 MobiDBLite consensus disorder prediction 250 272 - -
Seca3g08391 355 Pfam Myb/SANT-like DNA-binding domain 125 212 IPR044822 -
Seca3g08391 355 ProSiteProfiles Myb-like domain profile. 126 183 IPR001005 -
Seca3g08391 355 MobiDBLite consensus disorder prediction 1 88 - -
Seca3g08391 355 FunFam trihelix transcription factor ASIL2 126 188 - -
Seca3g08391 355 Coils Coil 324 344 - -
Seca3g08391 355 MobiDBLite consensus disorder prediction 34 49 - -
Seca3g08391 355 Coils Coil 46 66 - -
Seca3g08391 355 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08391 Seca-Chr3 214095581 214097364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08391 272 344 Trihelix Transcription Factor Family AT3G14180 46.575 9.21e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g08391 Myb_DNA-bind_4 3.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08391 - - gmx:100814194 439.113