Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08388 ATGGGTGTGAACTCTAATAGAGTGGAGCATTTTGATAGCCATGAAAACCCCATGAAATTCCAAACAGAGATACCAATGCCACCGCCATTAGAAATCCACCAAGTTCGGTTACCACCACACCGAACCACTCTCCGCAAACTCACACAAAGGCTCTCTGAAATCTTCTTCCCTGATGATCCACTCTCCCGTTTCAAAAACCAACCTCCCTTCACCAAGTTCCTTCTTGGACTTCAATACTTTTTCCCCATTTTCCAGTGGGGTCCTCACTATAACCTCTCCCTTCTCCGTTCTGATTTCATCTCTGGCCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATTAGTTATGCCAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCAAGTTTTGTGCCCCCATTGATATACTCCTTGCTTGGGAGTTCTAGACATCTTGGTGTTGGACCTGTTTCAATTGCGTCTTTGGTTATGGGATCAATGTTAAGTGAGACTGTTTCTTACACTCAAGATCCAATTCTCTATCTGCAATTGGCTTTCACTGCCACTTTTGTTGCTGGTTTGTTCCAAGCTTCTCTGGGTATATTAAGGTTAGGCTTTGTAATCGATTTCCTGTCGAAGGCAACTTTGGTGGGTTTCATGGCGGGTGCTGCGATCATTGTGTCACTGCAGCAGCTGAAAGGGTTACTTGGGATAGTGCACTTTACTAATAAGATGCAAATAATTCCTGTACTGGACTCTGTTTACAAGCAAAGACACGAGTGGTCATGGCAAACCATTCTTCTGGGATTTTGCTTCTTGGTCTTCCTGCTGACAACAAGGCACATTAGCTTGAAGAAACCAAAACTATTCTGGGTTTCAGCAGCTGCCCCTTTGACATCAGTTATTCTGTCAACCCTTTTAGTCTTTCTTCTCAAAAATAAGGCTCATAACATTGCAATTATTGGGTACTTACCAAAGGGCCTTAATCCACCATCATTAAACATGTTATACTTCAGTGGTTCTTACTTGGCTCTTGCTATCAAAACTGGCATTGTTACAGGGATCTTATCTCTCACTGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAGAATTACCAGGTGGATGGAAACAAAGAAATGATGGCAATTGGTCTTATGAACATAGCTGGTTCTTGTTCTTCATGCTATGTCACAACAGGATCATTTTCTCGATCAGCTGTTAACTATAATGCTGGAGCACAAACAACAGTTTCAAATATAATCATGGCTGCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCCTTGTTCTACTATACACCAAATGTTGTCTTGGCAGCCATTATCATTACTGCTGTGATTGGACTAATAGATTATCAAGCTGCATATAAATTATGGAAGGTTGACAAACTTGATTTCTTGGCTTGTTTGTGCTCCTTTTTTGGGGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGTATAGCGGTTTCCATATCAGTCTTCAAGATACTGCTTCATGTATCTCGACCAAACACTTCAGTTTTGGGGAATATACCAGGAACACAAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTTGCTAATTCAACTTACCTTCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGTGTACAAAAGCAAATAATGGAAGTTCATTGAAGTGTGTAATTTTAGACATGACAGCTGTAACAGCCATAGACACAAGTGGGCTTGAAACTTTAAATGAACTTAGAAAAATGCTGGAGAATAGATCACTTCAGCTTGTGTTGGTAAATCCCGTTGGAAATGTGATGCAAAAGTTAGATACGTCAAAAATTTTGGATTCCTTTGGATCAAAAGGAGTGTATCTCACAGTGGGAGAAGCTGTGGCTGACATTTCATCATCCGAGAAAGTTCAACCTTGA 1974 0.4093 MGVNSNRVEHFDSHENPMKFQTEIPMPPPLEIHQVRLPPHRTTLRKLTQRLSEIFFPDDPLSRFKNQPPFTKFLLGLQYFFPIFQWGPHYNLSLLRSDFISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLSETVSYTQDPILYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLDSVYKQRHEWSWQTILLGFCFLVFLLTTRHISLKKPKLFWVSAAAPLTSVILSTLLVFLLKNKAHNIAIIGYLPKGLNPPSLNMLYFSGSYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTTVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVSISVFKILLHVSRPNTSVLGNIPGTQIFHNINQYKEASRVPSFLILAVESPIYFANSTYLQERILRWVREEEECTKANNGSSLKCVILDMTAVTAIDTSGLETLNELRKMLENRSLQLVLVNPVGNVMQKLDTSKILDSFGSKGVYLTVGEAVADISSSEKVQP. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08388 657 SUPERFAMILY SpoIIaa-like 531 648 IPR036513 -
Seca3g08388 657 NCBIfam sulfate permease 82 645 IPR001902 GO:0016020|GO:0055085
Seca3g08388 657 PANTHER SULFATE TRANSPORTER 44 649 IPR001902 GO:0016020|GO:0055085
Seca3g08388 657 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Seca3g08388 657 CDD STAS_SulP_like_sulfate_transporter 527 642 - -
Seca3g08388 657 Gene3D STAS domain 506 652 IPR036513 -
Seca3g08388 657 ProSiteProfiles STAS domain profile. 526 649 IPR002645 -
Seca3g08388 657 FunFam Sulfate transporter 31 506 652 - -
Seca3g08388 657 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g08388 657 Pfam STAS domain 527 645 IPR002645 -
Seca3g08388 657 Pfam Sulfate permease family 95 474 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08388 Seca-Chr3 214048155 214053117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08388 1 657 Inorganic Solute Cotransporters AT3G15990 74.810 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08388 K17471 - gmx:100812617 1110.13