Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08366 ATGGAGAAAGACGGTCTTGGGCTTGAAATCACGGAACTAAGGTTGGGGCTTCCCGGTGGGGAAGTGGAAATAAAGAATAATAATGAGAAGCAGAAGAAGAGGGTGTTCTCGGAGATTGAGAATGATATTGATGAAAATAGCTCCTCGGAGGAGGATAAGAAAATAATGCAAGCGAAGAATCAAGTGGTAGGGTGGCCTCCAGTGTGTTCCTACCGGAAGAAGAATAGCATGAATGAAGCCTCCAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATTTGGGTATGCATAAGGGATACTCTCAGTTAGCCTTTGCCTTGGAGAAGCTCTTTGGTTGCTACGGAATCGGGGAGTCGTTAAAGGATGGAGACAATTCAGAACACGTTCCCATCTACGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTCCCCTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGATCTGCAACCAAAAGGATCGTTAAAGGGATTTATAGAAGACGTGACAAAATGA 576 0.4479 MEKDGLGLEITELRLGLPGGEVEIKNNNEKQKKRVFSEIENDIDENSSSEEDKKIMQAKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSQLAFALEKLFGCYGIGESLKDGDNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEDVTK. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08366 191 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
Seca3g08366 191 Pfam AUX/IAA family 30 174 IPR033389 -
Seca3g08366 191 Gene3D - 76 179 - -
Seca3g08366 191 SUPERFAMILY CAD & PB1 domains 75 167 - -
Seca3g08366 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Seca3g08366 191 FunFam Auxin-responsive protein 77 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08366 Seca-Chr3 213516672 213520974 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08366 74 189 B3 DNA Binding Superfamily AT4G23980 32.759 3.76e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca3g08366 AUX_IAA 7.2e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08366 K14484 - gmx:100811879 304.293